cluster # 1144

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Schistosoma mansoni
cluster # 1144 cluster # 1144 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1144#0 length = 581 sequences # 1

consensus_1144#1 length = 445 sequences # 1

consensusID : consensus_1144#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 581
fasta sequence

                              [GCATCCGTACATGTATGTGTATGTAAAAATGAAAATGAATACTTGATAGTAACAAAAACATACACTTTGAATAATGTGTTTCCTACTTATATGAACTTATTTTTATTCAGTCTCTGCTTGTTTGAAGTATTTATATGGCTGTGAGTGTACGGGAGAGAGAGAGAGAGGCAGAATTGATCGAGTGGAGTGTATCTTATTTATTGTCTAACAAAGTAACTGTGATCCATGTCTTTCTTTCCTAATTTCTTCTGTTTCAAATGTTTATCTATTAATCTTTCTTTTTTCTCCGTGCATATTTTTCACCATGACTNTAAGATTTTTGNTACGTATCCTACATTCTGTTTATACAGATATCTACGACGGTNTATATATATATATATATATATATATATATCCGGAGNTCTTAAAAATGAAATTATTAATGTTTGATTCAGNGAGTCATCTATTTTTTTTTATTCGATGAATGAATGNNTATNNTGCATAAACATTCCAGATGCTTAATNAAATGACTTTATTCCGNATTTCGACTACGAATTTTATTANTTTATATTGTTAACTTGCAGACTCTTTTTTGAGTCTAA]

[+] EMBL CD082446             [GCATCCGTACATGTATGTGTATGTAAAAATGAAAATGAATACTTGATAGTAACAAAAACATACACTTTGAATAATGTGTTTCCTACTTATATGAACTTATTTTTATTCAGTCTCTGCTTGTTTGAAGTATTTATATGGCTGTGAGTGTACGGGAGAGAGAGAGAGAGGCAGAATTGATCGAGTGGAGTGTATCTTATTTATTGTCTAACAAAGTAACTGTGATCCATGTCTTTCTTTCCTAATTTCTTCTGTTTCAAATGTTTATCTATTAATCTTTCTTTTTTCTCCGTGCATATTTTTCACCATGACTNTAAGATTTTTGNTACGTATCCTACATTCTGTTTATACAGATATCTACGACGGTNTATATATATATATATATATATATATATATCCGGAGNTCTTAAAAATGAAATTATTAATGTTTGATTCAGNGAGTCATCTATTTTTTTTTATTCGATGAATGAATGNNTATNNTGCATAAACATTCCAGATGCTTAATNAAATGACTTTATTCCGNATTTCGACTACGAATTTTATTANTTTATATTGTTAACTTGCAGACTCTTTTTTGAGTCTAA]




>consensus_1144#0
GCATCCGTACATGTATGTGTATGTAAAAATGAAAATGAATACTTGATAGTAACAAAAACA
TACACTTTGAATAATGTGTTTCCTACTTATATGAACTTATTTTTATTCAGTCTCTGCTTG
TTTGAAGTATTTATATGGCTGTGAGTGTACGGGAGAGAGAGAGAGAGGCAGAATTGATCG
AGTGGAGTGTATCTTATTTATTGTCTAACAAAGTAACTGTGATCCATGTCTTTCTTTCCT
AATTTCTTCTGTTTCAAATGTTTATCTATTAATCTTTCTTTTTTCTCCGTGCATATTTTT
CACCATGACTNTAAGATTTTTGNTACGTATCCTACATTCTGTTTATACAGATATCTACGA
CGGTNTATATATATATATATATATATATATATATCCGGAGNTCTTAAAAATGAAATTATT
AATGTTTGATTCAGNGAGTCATCTATTTTTTTTTATTCGATGAATGAATGNNTATNNTGC
ATAAACATTCCAGATGCTTAATNAAATGACTTTATTCCGNATTTCGACTACGAATTTTAT
TANTTTATATTGTTAACTTGCAGACTCTTTTTTGAGTCTAA

consensusID : consensus_1144#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 445
fasta sequence

                              [GAGGCAGAATTGATCGAGTGGAGTGTATCTTATTTATTGTCTAACAAAGTAACTGTGATCCATGTCTTTCTTTCCTAATTTCTTCTGTTTCAAATGTTTATCTATTAATCTTTCTTTTTTCTCCGGGCATATTTTTCCCCATGACTTTAAGATTTTTGTTACGTATCCTACATTCTGTTTATACAGATATCTACGCCGGTATATATATATATATATATATATATATATATTCTGAGTTCTTAAAATTGAATTTATTAATGTTTGATTCAGTGAAGTCATCTATTTTTTTTTTATTCGTATGAATGAAATGTTTAGTTGGCAATAAAAACATTCCCAGATTGCTTAAATAAAATTGACGTTTTATTTCGTATTTTCGGTACTAACGAATTTTTATTTAGTTTTATTATTGTTTTATCTTTGTCAAAGACTCGCTTTTTGATGTTTT]

[-] EMBL CD076044             [GAGGCAGAATTGATCGAGTGGAGTGTATCTTATTTATTGTCTAACAAAGTAACTGTGATCCATGTCTTTCTTTCCTAATTTCTTCTGTTTCAAATGTTTATCTATTAATCTTTCTTTTTTCTCCGGGCATATTTTTCCCCATGACTTTAAGATTTTTGTTACGTATCCTACATTCTGTTTATACAGATATCTACGCCGGTATATATATATATATATATATATATATATATTCTGAGTTCTTAAAATTGAATTTATTAATGTTTGATTCAGTGAAGTCATCTATTTTTTTTTTATTCGTATGAATGAAATGTTTAGTTGGCAATAAAAACATTCCCAGATTGCTTAAATAAAATTGACGTTTTATTTCGTATTTTCGGTACTAACGAATTTTTATTTAGTTTTATTATTGTTTTATCTTTGTCAAAGACTCGCTTTTTGATGTTTT]




>consensus_1144#1
GAGGCAGAATTGATCGAGTGGAGTGTATCTTATTTATTGTCTAACAAAGTAACTGTGATC
CATGTCTTTCTTTCCTAATTTCTTCTGTTTCAAATGTTTATCTATTAATCTTTCTTTTTT
CTCCGGGCATATTTTTCCCCATGACTTTAAGATTTTTGTTACGTATCCTACATTCTGTTT
ATACAGATATCTACGCCGGTATATATATATATATATATATATATATATATTCTGAGTTCT
TAAAATTGAATTTATTAATGTTTGATTCAGTGAAGTCATCTATTTTTTTTTTATTCGTAT
GAATGAAATGTTTAGTTGGCAATAAAAACATTCCCAGATTGCTTAAATAAAATTGACGTT
TTATTTCGTATTTTCGGTACTAACGAATTTTTATTTAGTTTTATTATTGTTTTATCTTTG
TCAAAGACTCGCTTTTTGATGTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1144#0      GCATCCGTACATGTATGTGTATGTAAAAATGAAAATGAATACTTGATAGTAACAAAAACA 60
consensus_1144#1      ------------------------------------------------------------
                                                                                  

consensus_1144#0      TACACTTTGAATAATGTGTTTCCTACTTATATGAACTTATTTTTATTCAGTCTCTGCTTG 120
consensus_1144#1      ------------------------------------------------------------
                                                                                  

consensus_1144#0      TTTGAAGTATTTATATGGCTGTGAGTGTACGGGAGAGAGAGAGAGAGGCAGAATTGATCG 180
consensus_1144#1      --------------------------------------------GAGGCAGAATTGATCG 16
                                                                  ****************

consensus_1144#0      AGTGGAGTGTATCTTATTTATTGTCTAACAAAGTAACTGTGATCCATGTCTTTCTTTCCT 240
consensus_1144#1      AGTGGAGTGTATCTTATTTATTGTCTAACAAAGTAACTGTGATCCATGTCTTTCTTTCCT 76
                      ************************************************************

consensus_1144#0      AATTTCTTCTGTTTCAAATGTTTATCTATTAATCTTTCTTTTTTCTCCGTGCATATTTTT 300
consensus_1144#1      AATTTCTTCTGTTTCAAATGTTTATCTATTAATCTTTCTTTTTTCTCCGGGCATATTTTT 136
                      ************************************************* **********

consensus_1144#0      CACCATGACTNTAAGATTTTTGNTACGTATCCTACATTCTGTTTATACAGATATCTACGA 360
consensus_1144#1      CCCCATGACTTTAAGATTTTTGTTACGTATCCTACATTCTGTTTATACAGATATCTACGC 196
                      * ******** *********** ************************************ 

consensus_1144#0      CGGTNTATATATATATATATATATATATATATATCCGGAGNTCTTAAAAATGAAATTATT 420
consensus_1144#1      CGGTATATATATATATATATATATATATATATATTCTGAGTTCTTAAAATTGAATTTATT 256
                      **** ***************************** * *** ******** **** *****

consensus_1144#0      AATGTTTGATTCAGNGA-GTCATCTATTTTTTTTT-ATTCG-ATGAATGAA-TGNNTATN 476
consensus_1144#1      AATGTTTGATTCAGTGAAGTCATCTATTTTTTTTTTATTCGTATGAATGAAATGTTTAGT 316
                      ************** ** ***************** ***** ********* **  **  

consensus_1144#0      NTGCAT---AAACATTCC-AGAT-GCTTAATNAAA--TGAC--TTTATTCCGNATTTCGA 527
consensus_1144#1      TGGCAATAAAAACATTCCCAGATTGCTTAAATAAAATTGACGTTTTATTTCGTATTTTCG 376
                        ***    ********* **** ******  ***  ****  ****** ** ****   

consensus_1144#0      CTACGAA-----TTTTATTANTTTATATTGTTAACTTGC---------AGACTCTTTTTT 573
consensus_1144#1      GTACTAACGAATTTTTATTTAGTTTTATTATTGTTTTATCTTTGTCAAAGACTCGCTTTT 436
                       *** **     *******   ** **** **   **           ******  ****

consensus_1144#0      GAGTCTAA- 581
consensus_1144#1      TGATGTTTT 445
                         * *