cluster # 1153

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Schistosoma mansoni
cluster # 1153 cluster # 1153 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1153#0 length = 380 sequences # 1

consensus_1153#1 length = 311 sequences # 1

consensusID : consensus_1153#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 380
fasta sequence

                              [AAGGAGAAGAATTAGACTATTTCTAGCACAGATTGGAAATGAAGGATATACGTTGAAAGATAATTTTGATCGGTGCAGATATTATGGTGAAGATGTGAAAGTAACGAAGAATTTCTGCAATTTAATTTTTTTGATGGGAGAAGAATAGTGAAAATACTTTATAAATATTTTCACACAGCACAGAAAGCAAATGATAAGCGTTTGGTAATAGTCTAAATATTATACACCACAAGGATACAAAGACTAATAAATGCACTTCCAATTCATTTACTTATGCATTGTAAGTTAATGGGATACTATGACTCAGGGTTTTGATTATATTTGCACTCCATTAAGGGTTTATGGTAAGGACGAGCGGTATTCAACAAATGGACTAAAAC]

[+] EMBL CD188798             [AAGGAGAAGAATTAGACTATTTCTAGCACAGATTGGAAATGAAGGATATACGTTGAAAGATAATTTTGATCGGTGCAGATATTATGGTGAAGATGTGAAAGTAACGAAGAATTTCTGCAATTTAATTTTTTTGATGGGAGAAGAATAGTGAAAATACTTTATAAATATTTTCACACAGCACAGAAAGCAAATGATAAGCGTTTGGTAATAGTCTAAATATTATACACCACAAGGATACAAAGACTAATAAATGCACTTCCAATTCATTTACTTATGCATTGTAAGTTAATGGGATACTATGACTCAGGGTTTTGATTATATTTGCACTCCATTAAGGGTTTATGGTAAGGACGAGCGGTATTCAACAAATGGACTAAAAC]




>consensus_1153#0
AAGGAGAAGAATTAGACTATTTCTAGCACAGATTGGAAATGAAGGATATACGTTGAAAGA
TAATTTTGATCGGTGCAGATATTATGGTGAAGATGTGAAAGTAACGAAGAATTTCTGCAA
TTTAATTTTTTTGATGGGAGAAGAATAGTGAAAATACTTTATAAATATTTTCACACAGCA
CAGAAAGCAAATGATAAGCGTTTGGTAATAGTCTAAATATTATACACCACAAGGATACAA
AGACTAATAAATGCACTTCCAATTCATTTACTTATGCATTGTAAGTTAATGGGATACTAT
GACTCAGGGTTTTGATTATATTTGCACTCCATTAAGGGTTTATGGTAAGGACGAGCGGTA
TTCAACAAATGGACTAAAAC

consensusID : consensus_1153#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 311
fasta sequence

                              [AGGAGAAGAATTAGACTATTTCTAGCACAGATTGGAAATGAAGGATATACGTTGAAAGATAATTTTGATCGGTGCAGAAAATATGGTGAAGATGTGAAAGTAACGAAGAATTTCGAAATAAGACTATTAGGTAAAAGTTGTGCATACTCTGAGCGATTAAGAACTGCAATCAGCGATAGAATAACAGCTTCGTGTATGCGTGACGAGTGATACGTATGCATTGTACTATTATTGCACACGAATGTAGTCATTAAAGCTTGAATTATAATTTGTCCAATTAATGGAAACAATAATAATAATTTTTTCCTATT]

[-] EMBL CD188500             [AGGAGAAGAATTAGACTATTTCTAGCACAGATTGGAAATGAAGGATATACGTTGAAAGATAATTTTGATCGGTGCAGAAAATATGGTGAAGATGTGAAAGTAACGAAGAATTTCGAAATAAGACTATTAGGTAAAAGTTGTGCATACTCTGAGCGATTAAGAACTGCAATCAGCGATAGAATAACAGCTTCGTGTATGCGTGACGAGTGATACGTATGCATTGTACTATTATTGCACACGAATGTAGTCATTAAAGCTTGAATTATAATTTGTCCAATTAATGGAAACAATAATAATAATTTTTTCCTATT]




>consensus_1153#1
AGGAGAAGAATTAGACTATTTCTAGCACAGATTGGAAATGAAGGATATACGTTGAAAGAT
AATTTTGATCGGTGCAGAAAATATGGTGAAGATGTGAAAGTAACGAAGAATTTCGAAATA
AGACTATTAGGTAAAAGTTGTGCATACTCTGAGCGATTAAGAACTGCAATCAGCGATAGA
ATAACAGCTTCGTGTATGCGTGACGAGTGATACGTATGCATTGTACTATTATTGCACACG
AATGTAGTCATTAAAGCTTGAATTATAATTTGTCCAATTAATGGAAACAATAATAATAAT
TTTTTCCTATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1153#0      AAGGAGAAGAATTAGACTATTTCTAGCACAGATTGGAAATGAAGGATATACGTTGAAAGA 60
consensus_1153#1      -AGGAGAAGAATTAGACTATTTCTAGCACAGATTGGAAATGAAGGATATACGTTGAAAGA 59
                       ***********************************************************

consensus_1153#0      TAATTTTGATCGGTGCAGATATTATGGTGAAGATGTGAAAGTAACGAAGAATTTCTGCAA 120
consensus_1153#1      TAATTTTGATCGGTGCAGAAAATATGGTGAAGATGTGAAAGTAACGAAGAATTTC-GAAA 118
                      ******************* * ********************************* * **

consensus_1153#0      TTTAATTTTTTTGATGGGAGAAGAATAGTGAAAATACT---TTATAAATATTTTCACACA 177
consensus_1153#1      TAAGACTATT------AGGTAAAAGTTGTGCATACTCTGAGCGATTAAGAACTGCAATCA 172
                      *   * * **       *  ** * * *** * *  **     ** ** *  * **  **

consensus_1153#0      GCACAGAAAGCAAATGATAAGCGTTTG-GTAATAGTCTAAATATTATACACCACAAGGAT 236
consensus_1153#1      GCG-ATAGAATAACAGCTTCGTGTATGCGTGACGAGTGATACGT-ATGCATTGTA---CT 227
                      **  * * *  **  * *  * ** ** ** *      * *  * ** **    *    *

consensus_1153#0      ACAAAGACTAATAAATGCACTTCCAATTCATTTACTTATGCATTGTA-AGTTAATGGGAT 295
consensus_1153#1      ATTATTGCACACGAATGTAGTCATTAAAGCTTGAATTATAATTTGTCCAATTAATGGAA- 286
                      *  *   *  *  **** * *    *    ** * ****   ****  * ******* * 

consensus_1153#0      ACTATGACTCAGGGTTTTGATTATATTTGCACTCCATTAAGGGTTTATGGTAAGGACGAG 355
consensus_1153#1      ACAATAATAATAATTTTTTCCTATT----------------------------------- 311
                      ** ** *       ****   ***                                    

consensus_1153#0      CGGTATTCAACAAATGGACTAAAAC 380
consensus_1153#1      -------------------------