cluster # 1200

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 1200 cluster # 1200 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1200#0 length = 262 sequences # 1

consensus_1200#1 length = 203 sequences # 1

consensusID : consensus_1200#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 262
fasta sequence

                              [AAAGCAATTCAAAGATAAGGGTACTAGTGCTCAAGAACGCCCGACAAAACTCGCCGTTGGAGTTTCTGGAGGTTTTGACTTTCCCCAAGATATGTATACAGTCACTGAACATTGGTCGCTAGTACGTCTTCCGCAAGGCGACTCATTTGATATCCCGAATCCAGAACCCGGACAAGGACAATCTGATATATCTCACTTAGAGATTTTGGAACTCCCTAAACGCCTGGCTACTTCGATCGCATTAATTCAACGTGCTGAGTCA]

[+] EMBL CD189919             [AAAGCAATTCAAAGATAAGGGTACTAGTGCTCAAGAACGCCCGACAAAACTCGCCGTTGGAGTTTCTGGAGGTTTTGACTTTCCCCAAGATATGTATACAGTCACTGAACATTGGTCGCTAGTACGTCTTCCGCAAGGCGACTCATTTGATATCCCGAATCCAGAACCCGGACAAGGACAATCTGATATATCTCACTTAGAGATTTTGGAACTCCCTAAACGCCTGGCTACTTCGATCGCATTAATTCAACGTGCTGAGTCA]




>consensus_1200#0
AAAGCAATTCAAAGATAAGGGTACTAGTGCTCAAGAACGCCCGACAAAACTCGCCGTTGG
AGTTTCTGGAGGTTTTGACTTTCCCCAAGATATGTATACAGTCACTGAACATTGGTCGCT
AGTACGTCTTCCGCAAGGCGACTCATTTGATATCCCGAATCCAGAACCCGGACAAGGACA
ATCTGATATATCTCACTTAGAGATTTTGGAACTCCCTAAACGCCTGGCTACTTCGATCGC
ATTAATTCAACGTGCTGAGTCA

consensusID : consensus_1200#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 203
fasta sequence

                              [GAGCACTAGTACCCTTATCTTTGAATTGCTTTTCGATCTTGTATCTTAGGAAAGCACGACAGCCAGTTTTCTCATAATAAAGCCTAAGTGTTTTAGAGCCGATCGCAACGAAGTGTCGCATGCATATGTATATTCCTTTTTCTGTCTCAGGTGTCTCAAACGAAAACGGACATTCATCCTTGAATACCTTTTCCCCGTCACCA]

[+] EMBL CD059759             [GAGCACTAGTACCCTTATCTTTGAATTGCTTTTCGATCTTGTATCTTAGGAAAGCACGACAGCCAGTTTTCTCATAATAAAGCCTAAGTGTTTTAGAGCCGATCGCAACGAAGTGTCGCATGCATATGTATATTCCTTTTTCTGTCTCAGGTGTCTCAAACGAAAACGGACATTCATCCTTGAATACCTTTTCCCCGTCACCA]




>consensus_1200#1
GAGCACTAGTACCCTTATCTTTGAATTGCTTTTCGATCTTGTATCTTAGGAAAGCACGAC
AGCCAGTTTTCTCATAATAAAGCCTAAGTGTTTTAGAGCCGATCGCAACGAAGTGTCGCA
TGCATATGTATATTCCTTTTTCTGTCTCAGGTGTCTCAAACGAAAACGGACATTCATCCT
TGAATACCTTTTCCCCGTCACCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1200#0      AAAGCAATTCAAAGATAAGGGTACTAGTGCTCAAGAACGCCCGACAAAACTCGCCGTTGG 60
consensus_1200#1      ------------------GAGCACTAGTACCCTTATCTTTGAATTGCTTTTCGATCTTGT 42
                                        * * ****** * *                  ***   *** 

consensus_1200#0      AGTTTCTGGAGGTTTTG-----ACTTTCCCCAAGATATGTATACAGTCACTGAACATTGG 115
consensus_1200#1      ATCTTAGGAAAGCACGACAGCCAGTTTTCTCATAATAAAGCCTAAGTGTTTTAGAGCCGA 102
                      *  **  * * *          * *** * **  ***       ***   * *     * 

consensus_1200#0      TCGCTAGTACGTCTTCCGCAAGGCGACTCATTTGATATCCCGAATCCAGAACCCGGACAA 175
consensus_1200#1      TCGCAACGAAGTGTCGCATGCATATGTATATTCCTTTTTCTGTCTCAGGTGTCT---CAA 159
                      **** *  * ** *  *            ***   * * * *  **  *   *    ***

consensus_1200#0      GGACAATCTGATATATCTCACTTAGAGATTTTGGAACTCCCTAAACGCCTGGCTACTTCG 235
consensus_1200#1      ACGAAAACGGACAT-TCATCCTTGAATACCTTT--TCCCCGTCACCA------------- 203
                          ** * ** ** **   ***  * *  **    * ** * * *              

consensus_1200#0      ATCGCATTAATTCAACGTGCTGAGTCA 262
consensus_1200#1      ---------------------------