cluster # 1205

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 1205 cluster # 1205 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1205#0 length = 351 sequences # 1

consensus_1205#1 length = 338 sequences # 1

consensusID : consensus_1205#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 351
fasta sequence

                              [AGTCCACTTACATTTATAGCATATGTACAATATATGGATTATACTGGATTTAGCCGTGCTATGGACATGCTGCGTGGTCAGAAGCAGGTATATATTCCTTCTGATCGAAGCAGACATCATGATCGTTCGATCGTAATAGAAAGATGAGTAGTATTTGGAAAAATTCGGGAGATCGATATATGAATGTTAGATCCTTCACAAAATCCTGATTGCTTGCCAGACTATATAAATAGCTATGAAACTTTAAATAGTTCATGTAATACATTAAAAACTGACACTACAGTTGAATATTCATTCCGTAATCAATCTGGTTGTACAGAGGAGTATATTGGTGGGTTCGGAAAAATTGGC]

[+] EMBL CD196171             [AGTCCACTTACATTTATAGCATATGTACAATATATGGATTATACTGGATTTAGCCGTGCTATGGACATGCTGCGTGGTCAGAAGCAGGTATATATTCCTTCTGATCGAAGCAGACATCATGATCGTTCGATCGTAATAGAAAGATGAGTAGTATTTGGAAAAATTCGGGAGATCGATATATGAATGTTAGATCCTTCACAAAATCCTGATTGCTTGCCAGACTATATAAATAGCTATGAAACTTTAAATAGTTCATGTAATACATTAAAAACTGACACTACAGTTGAATATTCATTCCGTAATCAATCTGGTTGTACAGAGGAGTATATTGGTGGGTTCGGAAAAATTGGC]




>consensus_1205#0
AGTCCACTTACATTTATAGCATATGTACAATATATGGATTATACTGGATTTAGCCGTGCT
ATGGACATGCTGCGTGGTCAGAAGCAGGTATATATTCCTTCTGATCGAAGCAGACATCAT
GATCGTTCGATCGTAATAGAAAGATGAGTAGTATTTGGAAAAATTCGGGAGATCGATATA
TGAATGTTAGATCCTTCACAAAATCCTGATTGCTTGCCAGACTATATAAATAGCTATGAA
ACTTTAAATAGTTCATGTAATACATTAAAAACTGACACTACAGTTGAATATTCATTCCGT
AATCAATCTGGTTGTACAGAGGAGTATATTGGTGGGTTCGGAAAAATTGGC

consensusID : consensus_1205#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 338
fasta sequence

                              [GAATTTTAAATCCAACTATACAACACAGTGTAACTAATTCGTCTTCAGCGGACACTGACAAATCAAAAGTATCTCATTTGATGAAGTCGAAAAAATCCAATATACTGACCAGTCCAACTAATACAAGTGTTGGTAGTCCACTTACATTTATAGCATATGTACAATATATGGATTATACTGGATTTAGCCGTGCTATGGACATGCTGCGTGGTCAGAAACTTGTTTATGCTCCAACTTATCGAAGTCAGTCATCAGCATTGGCGGATCAGAATGAAAAGTTGTACTATGCAGCTGAAATTAAGATTGATTTTGATCGAACTAAACACTTATCACCAGAT]

[+] EMBL CD188827             [GAATTTTAAATCCAACTATACAACACAGTGTAACTAATTCGTCTTCAGCGGACACTGACAAATCAAAAGTATCTCATTTGATGAAGTCGAAAAAATCCAATATACTGACCAGTCCAACTAATACAAGTGTTGGTAGTCCACTTACATTTATAGCATATGTACAATATATGGATTATACTGGATTTAGCCGTGCTATGGACATGCTGCGTGGTCAGAAACTTGTTTATGCTCCAACTTATCGAAGTCAGTCATCAGCATTGGCGGATCAGAATGAAAAGTTGTACTATGCAGCTGAAATTAAGATTGATTTTGATCGAACTAAACACTTATCACCAGAT]




>consensus_1205#1
GAATTTTAAATCCAACTATACAACACAGTGTAACTAATTCGTCTTCAGCGGACACTGACA
AATCAAAAGTATCTCATTTGATGAAGTCGAAAAAATCCAATATACTGACCAGTCCAACTA
ATACAAGTGTTGGTAGTCCACTTACATTTATAGCATATGTACAATATATGGATTATACTG
GATTTAGCCGTGCTATGGACATGCTGCGTGGTCAGAAACTTGTTTATGCTCCAACTTATC
GAAGTCAGTCATCAGCATTGGCGGATCAGAATGAAAAGTTGTACTATGCAGCTGAAATTA
AGATTGATTTTGATCGAACTAAACACTTATCACCAGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1205#0      AGTCCACTTACATTTATAGCATATGTACAATATATGGATTATACTGGATTTAGC-CGTGC 59
consensus_1205#1      ---------------GAATTTTAAATCCAAC-TATACAACACAGTGTAACTAATTCGTCT 44
                                       *   **  * ***  ***  *  * * ** *  **   ***  

consensus_1205#0      TATGGACATGCTGCGTGGTCAGAAGCAGGT-ATATATTCCTTCTGATCGAAGCAGACATC 118
consensus_1205#1      TCAGCGGACACTGACAAATCAAAAGTATCTCATTTGATGAAGTCGAAAAAATCCAATATA 104
                      *  *   *  ***     *** *** *  * ** *  *      **   ** *  * ** 

consensus_1205#0      ATGATCGTTCGATCGTAATAGAAAGATGAGTAGTATTTGGAAAAATTCGGGAGATCGATA 178
consensus_1205#1      CTGACCAGTCCAAC-TAATACAAGTGTTGGTAG--TCCACTTACATTTA------TAGCA 155
                       *** *  ** * * ***** **   *  ****  *      * ***            *

consensus_1205#0      TATGAATGTTAGATCCTTCACAAAATCCTGATTGCTTGCCAGACTATATAAATAGCTATG 238
consensus_1205#1      TATGTACAATATATGGATTATA----CTGGATT--TAGCCGTGCTATGGACAT-GCTGCG 208
                      **** *   ** **   * * *    *  ****  * ***   ****  * ** ***  *

consensus_1205#0      AAACTTTAAA-TAGTTCATGT---AATACATTAAAAACTGACACTACAGTTGAATATTCA 294
consensus_1205#1      TGGTCAGAAACTTGTTTATGCTCCAACTTATCGAAGTCAGTCATCAGCATTGGCGGATCA 268
                             *** * *** ***    **   **  **  * * **  *   ***     ***

consensus_1205#0      TTCCGTAATCAATCTGGTTGTACAGAGGAGTATATTGGTGGGTTCGGAAAAATTGGC--- 351
consensus_1205#1      GAATGAAA--AGTTGTACTATGCAGCTGAAATTAAGATTGATTTTGATCGAACTAAACAC 326
                          * **  * *     * * ***  **   **    **  ** *    ** *      

consensus_1205#0      ------------
consensus_1205#1      TTATCACCAGAT 338