cluster # 1208

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Schistosoma mansoni
cluster # 1208 cluster # 1208 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1208#0 length = 625 sequences # 1

consensus_1208#1 length = 529 sequences # 1

consensusID : consensus_1208#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 625
fasta sequence

                              [ATCTTTTTATTAAATTGAGATAATAAAAACTCAAAAATATTTCTATTTGATTAACAAGAATAAAATAAACAAAGCGGCACGACAATAAAAATAAAATTACTATTCGCCGGCACAATGGTAAAAGCAAGCATGAAAGACCAACAATGAATCTTTTTAATATGAAGTGAATATGCAATGTTTTAGAATATAGTGCTTTAAAAATGCATATAGCTGGTCATTATACAATCTTCGTCAGAACTCAAGAAATTCTTGAAAAAGTTTACATGATTGAGGATTGATTGGTCCGTCTGGACGACAGTCCTTTCGACACAAGCATATTGTACAAGGGATATTAGCCAAATTTGCAACAGATGGTGTTTGTGTAGCTAGTCGATAAAGTATTCCAAAACTAGTACATTGTTCAGATGTTTCAGAAGTAATACGTGTTTCCAGTTCGCCCCCAAACTTTAAAACTTCAAGGACACATTGGACATCCTGAACAGTCATAGATACCGTGCAAATTTTTGTGTTAGTGATAAAACGATGAATTTCTTCACAAGAAACATATGAAGCTTGCCGACGTTCTAATGGATCAGCAATATGAGAAGCTGAAATCGCCTTATCCTGAAGATACTTTANGCAGGCT]

[+] EMBL CD076212             [ATCTTTTTATTAAATTGAGATAATAAAAACTCAAAAATATTTCTATTTGATTAACAAGAATAAAATAAACAAAGCGGCACGACAATAAAAATAAAATTACTATTCGCCGGCACAATGGTAAAAGCAAGCATGAAAGACCAACAATGAATCTTTTTAATATGAAGTGAATATGCAATGTTTTAGAATATAGTGCTTTAAAAATGCATATAGCTGGTCATTATACAATCTTCGTCAGAACTCAAGAAATTCTTGAAAAAGTTTACATGATTGAGGATTGATTGGTCCGTCTGGACGACAGTCCTTTCGACACAAGCATATTGTACAAGGGATATTAGCCAAATTTGCAACAGATGGTGTTTGTGTAGCTAGTCGATAAAGTATTCCAAAACTAGTACATTGTTCAGATGTTTCAGAAGTAATACGTGTTTCCAGTTCGCCCCCAAACTTTAAAACTTCAAGGACACATTGGACATCCTGAACAGTCATAGATACCGTGCAAATTTTTGTGTTAGTGATAAAACGATGAATTTCTTCACAAGAAACATATGAAGCTTGCCGACGTTCTAATGGATCAGCAATATGAGAAGCTGAAATCGCCTTATCCTGAAGATACTTTANGCAGGCT]




>consensus_1208#0
ATCTTTTTATTAAATTGAGATAATAAAAACTCAAAAATATTTCTATTTGATTAACAAGAA
TAAAATAAACAAAGCGGCACGACAATAAAAATAAAATTACTATTCGCCGGCACAATGGTA
AAAGCAAGCATGAAAGACCAACAATGAATCTTTTTAATATGAAGTGAATATGCAATGTTT
TAGAATATAGTGCTTTAAAAATGCATATAGCTGGTCATTATACAATCTTCGTCAGAACTC
AAGAAATTCTTGAAAAAGTTTACATGATTGAGGATTGATTGGTCCGTCTGGACGACAGTC
CTTTCGACACAAGCATATTGTACAAGGGATATTAGCCAAATTTGCAACAGATGGTGTTTG
TGTAGCTAGTCGATAAAGTATTCCAAAACTAGTACATTGTTCAGATGTTTCAGAAGTAAT
ACGTGTTTCCAGTTCGCCCCCAAACTTTAAAACTTCAAGGACACATTGGACATCCTGAAC
AGTCATAGATACCGTGCAAATTTTTGTGTTAGTGATAAAACGATGAATTTCTTCACAAGA
AACATATGAAGCTTGCCGACGTTCTAATGGATCAGCAATATGAGAAGCTGAAATCGCCTT
ATCCTGAAGATACTTTANGCAGGCT

consensusID : consensus_1208#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 529
fasta sequence

                              [ACAGTCCTTTCGACACAAGCATATTGTACAAGGGATATTAGCCAAATTTGCAACAGATGGTGTTTGTGTAGCTAGTCGATAAAGTATTCCAAAACTAGTACTTTGTTCAGATGTTTCAGAAGTAATACGTGTTTCCAGTTCGCCCCCAAACTTTAAAACTTCAAGGACACATTGGACATCCTGAACAGTCATAGATACCTAAGAACGTCACGATATCAAAGACAGGAGTTATGCAAACTTTTAAATTACTTACACCTAAATAACATACACAACAAATATAAAAGTAAGTTTTACGCAATCTATCATCTGATATTCTAATTCCTAAAATAAAAGCACTGTGAAAATGTTGGTGTTAATCTCCAGTAGCTTGCTCGTTTAATAATATCACTTTATTTTATACTATAGATTTTCAATGCATAAAACCTCCAAATCCTTTACAATAATAAATTCCTATTTTCGGTGTAAGGCTTAGATATGTATTTCCTATGATCTCTCATACATTAAGAACTCTAGGCAGTGACACACTGTA]

[-] EMBL CD083373             [ACAGTCCTTTCGACACAAGCATATTGTACAAGGGATATTAGCCAAATTTGCAACAGATGGTGTTTGTGTAGCTAGTCGATAAAGTATTCCAAAACTAGTACTTTGTTCAGATGTTTCAGAAGTAATACGTGTTTCCAGTTCGCCCCCAAACTTTAAAACTTCAAGGACACATTGGACATCCTGAACAGTCATAGATACCTAAGAACGTCACGATATCAAAGACAGGAGTTATGCAAACTTTTAAATTACTTACACCTAAATAACATACACAACAAATATAAAAGTAAGTTTTACGCAATCTATCATCTGATATTCTAATTCCTAAAATAAAAGCACTGTGAAAATGTTGGTGTTAATCTCCAGTAGCTTGCTCGTTTAATAATATCACTTTATTTTATACTATAGATTTTCAATGCATAAAACCTCCAAATCCTTTACAATAATAAATTCCTATTTTCGGTGTAAGGCTTAGATATGTATTTCCTATGATCTCTCATACATTAAGAACTCTAGGCAGTGACACACTGTA]




>consensus_1208#1
ACAGTCCTTTCGACACAAGCATATTGTACAAGGGATATTAGCCAAATTTGCAACAGATGG
TGTTTGTGTAGCTAGTCGATAAAGTATTCCAAAACTAGTACTTTGTTCAGATGTTTCAGA
AGTAATACGTGTTTCCAGTTCGCCCCCAAACTTTAAAACTTCAAGGACACATTGGACATC
CTGAACAGTCATAGATACCTAAGAACGTCACGATATCAAAGACAGGAGTTATGCAAACTT
TTAAATTACTTACACCTAAATAACATACACAACAAATATAAAAGTAAGTTTTACGCAATC
TATCATCTGATATTCTAATTCCTAAAATAAAAGCACTGTGAAAATGTTGGTGTTAATCTC
CAGTAGCTTGCTCGTTTAATAATATCACTTTATTTTATACTATAGATTTTCAATGCATAA
AACCTCCAAATCCTTTACAATAATAAATTCCTATTTTCGGTGTAAGGCTTAGATATGTAT
TTCCTATGATCTCTCATACATTAAGAACTCTAGGCAGTGACACACTGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1208#0      ATCTTTTTATTAAATTGAGATAATAAAAACTCAAAAATATTTCTATTTGATTAACAAGAA 60
consensus_1208#1      ------------------------------------ACAGTCCT-TTCGAC--ACAAGCA 21
                                                          * * * ** ** **   ***** *

consensus_1208#0      TAAAATAAACAAAGCGGCACGACAATAAAAATAAAATTACTATTCGCCGGCACAATGGTA 120
consensus_1208#1      TATTGTACAAGGGATATTAGCCAAATTTGCAACAGATGGTGTTTGTGTAGCTAGTCGATA 81
                      **   ** *         *    ***    *  * **     **     **     * **

consensus_1208#0      AAAGCAAGCATGA--AAGACCAACAATGAATCTTTTTAATATGAAGTGAATATGCAATGT 178
consensus_1208#1      AAGTATTCCAAAACTAGTACTTTGTTCAGATGTTTCAGAAGTAATACGTGTTTCCAGTTC 141
                      **      **  *  *  **         ** ***   *  * *   *  * * ** *  

consensus_1208#0      ---TTTAGAATATAGTGCTTTAAAAATGCATATAGCTGGTCATTATACAATCTTCGTCAG 235
consensus_1208#1      GCCCCCAAACTTTAAAACTTCAAGGACACAT-----TGGACATCCTG-AACAGTCATAGA 195
                            * * * **   *** **  *  ***     *** ***  *  **   ** *   

consensus_1208#0      AACTCAAGAAATTCTTGAAAAAGTTTACATGATTGAGGATTGATTGGTCCGTCTGGACGA 295
consensus_1208#1      TACCTAAGAACGTCACGA-------TATCAAAGACAGGAGTTATGCAAACTTTTAAATTA 248
                       **  *****  **  **       **    *   **** * **     * * *  *  *

consensus_1208#0      CAGTCCTTTCGACACAAGCATATTGTACAAGGGATATTAGCCAAATTTGCAACAGATGGT 355
consensus_1208#1      CTTACACCTAAATA---ACATACACAACAAAT-ATAAAAGTAAGTTTTACGCAATCTATC 304
                      *   *   *  * *    ****    ****   ***  **  *  *** *   *  *   

consensus_1208#0      GTTTGTGTAGCTAGTCGATAAAGTATTCCAAAACTAGTACATTGTTCAGATGTTTCAGAA 415
consensus_1208#1      ATCTGATATTCTAAT----------TCCTAAAATAAAAGCACTGTGAAAATGTT-----G 349
                       * **     *** *          * * ****  *   ** ***  * *****      

consensus_1208#0      GTAATACGTGTTTCCAGTTCGCCC-CCAAACTTTAAAACTTCAAGGACACATTGGACATC 474
consensus_1208#1      GTGTTAATCTCCAGTAGCTTGCTCGTTTAATAATATCACTTTATTT-TATACTATAGATT 408
                      **  **         ** * ** *    **   **  **** *     * * *  * ** 

consensus_1208#0      CTGAACAGTCATAGATACCGTGCAAATTTTTGTGTTAGTGATAAAACGATGAATTTCTTC 534
consensus_1208#1      TTCAATG--CATAAA-ACC-TCCAAATCCTTTA--CAATAATAAATTCCT-ATTTTCGGT 461
                       * **    **** * *** * *****  **     * * *****    * * ****   

consensus_1208#0      ACAAGAAACATATGAAGCTTGCCGACG--TTCTAATGGATCAGCAATATGAGAAGCTGAA 592
consensus_1208#1      GTAAGGCTTAGATATGTATTTCCTATGATCTCTCATACATTAAGAACTCTAGGCAGTGAC 521
                        ***    * **     ** ** * *   *** **  ** *  **    **    *** 

consensus_1208#0      ATCGCCTTATCCTGAAGATACTTTANGCAGGCT 625
consensus_1208#1      A-CACTGTA------------------------ 529
                      * * *  **