cluster # 1217

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 1217 cluster # 1217 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1217#0 length = 449 sequences # 1

consensus_1217#1 length = 391 sequences # 1

consensusID : consensus_1217#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 449
fasta sequence

                              [CATTGAGGATTTGGGTAGTAATCGTTATGTTTGCTATGGAGAAGTTGCTGTTCTAGATGATGATACCTTGGAGATTACTGAACTTCCTATCCGGGTCTGGACACAGAACTACAAAGAATCGGTTTTAGAGCCTATGTTGAATGGTTCAGAAAAGGTCCCTGCTTGTATCACAGATTACAAAGAATACCATACAGATGTCACTGTGCGGTTCGTTATTAAGATGTCTCCTGAAAAATTGCGCGAAGCCGAGTCTACTGGACTTCATAAATTCTTCAAACTTCAAACGGTCATGAGTACCGGTTCAATGGTTTGCTTCGATCCTTTAGGTTGTTTAAAGTGTTATCCCAATGAGATCATTATTATCCGCGAATTCTACGAATTACGTCTTACATGGTATGAAAAACGGAAGGTCTACCTAGAAGGTGTATTGTCTGCAGAGGCTCCGAAAC]

[+] EMBL CD130934             [CATTGAGGATTTGGGTAGTAATCGTTATGTTTGCTATGGAGAAGTTGCTGTTCTAGATGATGATACCTTGGAGATTACTGAACTTCCTATCCGGGTCTGGACACAGAACTACAAAGAATCGGTTTTAGAGCCTATGTTGAATGGTTCAGAAAAGGTCCCTGCTTGTATCACAGATTACAAAGAATACCATACAGATGTCACTGTGCGGTTCGTTATTAAGATGTCTCCTGAAAAATTGCGCGAAGCCGAGTCTACTGGACTTCATAAATTCTTCAAACTTCAAACGGTCATGAGTACCGGTTCAATGGTTTGCTTCGATCCTTTAGGTTGTTTAAAGTGTTATCCCAATGAGATCATTATTATCCGCGAATTCTACGAATTACGTCTTACATGGTATGAAAAACGGAAGGTCTACCTAGAAGGTGTATTGTCTGCAGAGGCTCCGAAAC]




>consensus_1217#0
CATTGAGGATTTGGGTAGTAATCGTTATGTTTGCTATGGAGAAGTTGCTGTTCTAGATGA
TGATACCTTGGAGATTACTGAACTTCCTATCCGGGTCTGGACACAGAACTACAAAGAATC
GGTTTTAGAGCCTATGTTGAATGGTTCAGAAAAGGTCCCTGCTTGTATCACAGATTACAA
AGAATACCATACAGATGTCACTGTGCGGTTCGTTATTAAGATGTCTCCTGAAAAATTGCG
CGAAGCCGAGTCTACTGGACTTCATAAATTCTTCAAACTTCAAACGGTCATGAGTACCGG
TTCAATGGTTTGCTTCGATCCTTTAGGTTGTTTAAAGTGTTATCCCAATGAGATCATTAT
TATCCGCGAATTCTACGAATTACGTCTTACATGGTATGAAAAACGGAAGGTCTACCTAGA
AGGTGTATTGTCTGCAGAGGCTCCGAAAC

consensusID : consensus_1217#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 391
fasta sequence

                              [CATTGAGGTAAGAAAAAAAGTGCAATGGATATTATTATTGTTATTGTCGTTTGTTAGATTATGTGCTCCACTGTCATGTTGTACCGATTACTATTTATATATCAATAAATAAATTTATTTTTAGGATTTGGGTAGTAATCGTTATGTTTGCTATGGAGAAGTTGCTGTTCTAGATGATGATACCTTGGAGATTACTGAACTTCCTATCCGGGTCTGGACACAGAACTACAAAGAATCGGTTTTAGAGCCTATGTTGAATGGTTCAGAAAAGGTCCCTGCTTGTATCACGTAAGTAAAGTATTCCTTTCAATCTTCATATCTAAAATTTCCTAACTTTTAAGAAAATGTGTCTAACTTTTATTTTGTTCGCTTTACAGATTACAAAGAATAC]

[+] EMBL CD165801             [CATTGAGGTAAGAAAAAAAGTGCAATGGATATTATTATTGTTATTGTCGTTTGTTAGATTATGTGCTCCACTGTCATGTTGTACCGATTACTATTTATATATCAATAAATAAATTTATTTTTAGGATTTGGGTAGTAATCGTTATGTTTGCTATGGAGAAGTTGCTGTTCTAGATGATGATACCTTGGAGATTACTGAACTTCCTATCCGGGTCTGGACACAGAACTACAAAGAATCGGTTTTAGAGCCTATGTTGAATGGTTCAGAAAAGGTCCCTGCTTGTATCACGTAAGTAAAGTATTCCTTTCAATCTTCATATCTAAAATTTCCTAACTTTTAAGAAAATGTGTCTAACTTTTATTTTGTTCGCTTTACAGATTACAAAGAATAC]




>consensus_1217#1
CATTGAGGTAAGAAAAAAAGTGCAATGGATATTATTATTGTTATTGTCGTTTGTTAGATT
ATGTGCTCCACTGTCATGTTGTACCGATTACTATTTATATATCAATAAATAAATTTATTT
TTAGGATTTGGGTAGTAATCGTTATGTTTGCTATGGAGAAGTTGCTGTTCTAGATGATGA
TACCTTGGAGATTACTGAACTTCCTATCCGGGTCTGGACACAGAACTACAAAGAATCGGT
TTTAGAGCCTATGTTGAATGGTTCAGAAAAGGTCCCTGCTTGTATCACGTAAGTAAAGTA
TTCCTTTCAATCTTCATATCTAAAATTTCCTAACTTTTAAGAAAATGTGTCTAACTTTTA
TTTTGTTCGCTTTACAGATTACAAAGAATAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1217#0      ------------------------------------------------------------
consensus_1217#1      CATTGAGGTAAGAAAAAAAGTGCAATGGATATTATTATTGTTATTGTCGTTTGTTAGATT 60
                                                                                  

consensus_1217#0      ---------------------------------------------------------CAT 3
consensus_1217#1      ATGTGCTCCACTGTCATGTTGTACCGATTACTATTTATATATCAATAAATAAATTTATTT 120
                                                                                 *

consensus_1217#0      TGAGGATTTGGGTAGTAATCGTTATGTTTGCTATGGAGAAGTTGCTGTTCTAGATGATGA 63
consensus_1217#1      TTAGGATTTGGGTAGTAATCGTTATGTTTGCTATGGAGAAGTTGCTGTTCTAGATGATGA 180
                      * **********************************************************

consensus_1217#0      TACCTTGGAGATTACTGAACTTCCTATCCGGGTCTGGACACAGAACTACAAAGAATCGGT 123
consensus_1217#1      TACCTTGGAGATTACTGAACTTCCTATCCGGGTCTGGACACAGAACTACAAAGAATCGGT 240
                      ************************************************************

consensus_1217#0      TTTAGAGCCTATGTTGAATGGTTCAGAAAAGGTCCCTGCTTGTATCACAGATTACAAAGA 183
consensus_1217#1      TTTAGAGCCTATGTTGAATGGTTCAGAAAAGGTCCCTGCTTGTATCACGTAA-GTAAAGT 299
                      ************************************************  *    **** 

consensus_1217#0      ATACCATACAGATGTCACTGTGCGGTTCGTTATTAAGATGTCTCCTGAAAAATTGCGCGA 243
consensus_1217#1      ATTCCTTTCAATC------------TTCATATCTAAAATTTCCT-----AACTTTTAAGA 342
                      ** ** * **               *** *   *** ** **       ** **    **

consensus_1217#0      AGCCGAGTCTACTGGACTTCATAAATTCTTCAAACTTCAAACGGTCATGAGTACCGGTTC 303
consensus_1217#1      AAATGTGTCTA----ACTTT-TATTTTGTTCGCTTTACAGATTACAAAGAATAC------ 391
                      *   * *****    ****  **  ** ***    * ** *     * ** ***      

consensus_1217#0      AATGGTTTGCTTCGATCCTTTAGGTTGTTTAAAGTGTTATCCCAATGAGATCATTATTAT 363
consensus_1217#1      ------------------------------------------------------------
                                                                                  

consensus_1217#0      CCGCGAATTCTACGAATTACGTCTTACATGGTATGAAAAACGGAAGGTCTACCTAGAAGG 423
consensus_1217#1      ------------------------------------------------------------
                                                                                  

consensus_1217#0      TGTATTGTCTGCAGAGGCTCCGAAAC 449
consensus_1217#1      --------------------------