cluster # 1338

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Schistosoma mansoni
cluster # 1338 cluster # 1338 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1338#0 length = 565 sequences # 1

consensus_1338#1 length = 371 sequences # 1

consensusID : consensus_1338#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 565
fasta sequence

                              [AATGCGTCAATGTGGAAGTTACTTTGTTAAGAATGCAAATGGATAGAAAATTGCATTATTCAAACCGAAGGATGAATAGCCCTATGGGAAGCTTAATCCAAAATGGACCAAATGGATGCATAAACACTGCTGCCCTTGCTGTTTTGGTCGATCATGTTTGGTTCCTAATCAAGGTTACCTTTCAGAGGCTGGTGCCAGTCTTGTAGATCAGAGACTACGGCTCAATATTGTTCCTACAACAAGAGTTGTTCGTTTAGTAAGCGAAAGTTTCAACTACAGCACAGTTGATCGCGCAAAATCTAGGACTAAACAACACTTTGCTTCACGGTTCCCCGAGTTAGGCCGTCATTTCAACCGTCTTGGGCTTCCTCCAAAAATCGGATCTTTCCAGCTTTTTGTTTCTGGTTGTCGAGATGCTGACTATTGGCTACGTCATTTCGATAATGAATCACTTCCTAAGCCTACAGCTTCAGAATTCCGATTTCAGTTTGAAAAACTTGTTGTACTTGATTATCTTATTCGGAATACAGATCGTGGGAAATGATATTGGCTTATTCGTTATCAA]

[+] EMBL CD161620             [AATGCGTCAATGTGGAAGTTACTTTGTTAAGAATGCAAATGGATAGAAAATTGCATTATTCAAACCGAAGGATGAATAGCCCTATGGGAAGCTTAATCCAAAATGGACCAAATGGATGCATAAACACTGCTGCCCTTGCTGTTTTGGTCGATCATGTTTGGTTCCTAATCAAGGTTACCTTTCAGAGGCTGGTGCCAGTCTTGTAGATCAGAGACTACGGCTCAATATTGTTCCTACAACAAGAGTTGTTCGTTTAGTAAGCGAAAGTTTCAACTACAGCACAGTTGATCGCGCAAAATCTAGGACTAAACAACACTTTGCTTCACGGTTCCCCGAGTTAGGCCGTCATTTCAACCGTCTTGGGCTTCCTCCAAAAATCGGATCTTTCCAGCTTTTTGTTTCTGGTTGTCGAGATGCTGACTATTGGCTACGTCATTTCGATAATGAATCACTTCCTAAGCCTACAGCTTCAGAATTCCGATTTCAGTTTGAAAAACTTGTTGTACTTGATTATCTTATTCGGAATACAGATCGTGGGAAATGATATTGGCTTATTCGTTATCAA]




>consensus_1338#0
AATGCGTCAATGTGGAAGTTACTTTGTTAAGAATGCAAATGGATAGAAAATTGCATTATT
CAAACCGAAGGATGAATAGCCCTATGGGAAGCTTAATCCAAAATGGACCAAATGGATGCA
TAAACACTGCTGCCCTTGCTGTTTTGGTCGATCATGTTTGGTTCCTAATCAAGGTTACCT
TTCAGAGGCTGGTGCCAGTCTTGTAGATCAGAGACTACGGCTCAATATTGTTCCTACAAC
AAGAGTTGTTCGTTTAGTAAGCGAAAGTTTCAACTACAGCACAGTTGATCGCGCAAAATC
TAGGACTAAACAACACTTTGCTTCACGGTTCCCCGAGTTAGGCCGTCATTTCAACCGTCT
TGGGCTTCCTCCAAAAATCGGATCTTTCCAGCTTTTTGTTTCTGGTTGTCGAGATGCTGA
CTATTGGCTACGTCATTTCGATAATGAATCACTTCCTAAGCCTACAGCTTCAGAATTCCG
ATTTCAGTTTGAAAAACTTGTTGTACTTGATTATCTTATTCGGAATACAGATCGTGGGAA
ATGATATTGGCTTATTCGTTATCAA

consensusID : consensus_1338#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 371
fasta sequence

                              [AGAAGCTTACTAGTTAGGAATTAATCGTTGAAAAACAGTAATTATTGGCTAGTAAATATTTTTTAGTAGATATTAAGGGGAATTACGTTGCTTCTAACTATTATAGTAGGATTATTCAAATTCTGTTGCTTCATTTCTACTATTAGACATTTACTTTTTTCATCAGATCGGATCTTTCCAGCTTTTTGTTTCTGGTTGTCGAGATGCTGACTATTGGCTACGTCATTTCGATAATGAATCACTTCCTAAGCCTACAGCTTCAGGATTCCGATTTCAGTTTGAAAAACTTGTTGTACTTGATTATCTTATTCGGAATACAGGTATACAATAATCACGTCAGTTTTTATTTTGACAAGATGTTTTTGTTAATT]

[+] EMBL CD197046             [AGAAGCTTACTAGTTAGGAATTAATCGTTGAAAAACAGTAATTATTGGCTAGTAAATATTTTTTAGTAGATATTAAGGGGAATTACGTTGCTTCTAACTATTATAGTAGGATTATTCAAATTCTGTTGCTTCATTTCTACTATTAGACATTTACTTTTTTCATCAGATCGGATCTTTCCAGCTTTTTGTTTCTGGTTGTCGAGATGCTGACTATTGGCTACGTCATTTCGATAATGAATCACTTCCTAAGCCTACAGCTTCAGGATTCCGATTTCAGTTTGAAAAACTTGTTGTACTTGATTATCTTATTCGGAATACAGGTATACAATAATCACGTCAGTTTTTATTTTGACAAGATGTTTTTGTTAATT]




>consensus_1338#1
AGAAGCTTACTAGTTAGGAATTAATCGTTGAAAAACAGTAATTATTGGCTAGTAAATATT
TTTTAGTAGATATTAAGGGGAATTACGTTGCTTCTAACTATTATAGTAGGATTATTCAAA
TTCTGTTGCTTCATTTCTACTATTAGACATTTACTTTTTTCATCAGATCGGATCTTTCCA
GCTTTTTGTTTCTGGTTGTCGAGATGCTGACTATTGGCTACGTCATTTCGATAATGAATC
ACTTCCTAAGCCTACAGCTTCAGGATTCCGATTTCAGTTTGAAAAACTTGTTGTACTTGA
TTATCTTATTCGGAATACAGGTATACAATAATCACGTCAGTTTTTATTTTGACAAGATGT
TTTTGTTAATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1338#0      AATGCGTCAATGTGGAAGTTACTTTGTTAAGAATGCAAATGGATAGAAAATTGCATTATT 60
consensus_1338#1      ------------------------------------------------------------
                                                                                  

consensus_1338#0      CAAACCGAAGGATGAATAGCCCTATGGGAAGCTTAATCCAAAATGGACCAAATGGATGCA 120
consensus_1338#1      ------------------------------------------------------------
                                                                                  

consensus_1338#0      TAAACACTGCTGCCCTTGCTGTTTTGGTCGATCATGTTTGGTTCCTAATCAAGGTTACCT 180
consensus_1338#1      ------------------------------------------------------------
                                                                                  

consensus_1338#0      TTCAGAGGCTGGTGCCAGTCTTGTAGATCAGAGACTACGGCTCAATATTGTTCCTACAAC 240
consensus_1338#1      ---AGAAGCT--TACTAGT--TAGGAATTAATCGTTGAAAAACAGTAATTATTGGCTAGT 53
                         *** ***  * * ***  *    ** *     *      ** ** *  *     *  

consensus_1338#0      AAGAGTTGTTCGTTTAGTAAGCGAAAGTTTCAACTACAGCACAGTTGATCGCGCAAAATC 300
consensus_1338#1      AAATATTTTT----TAGTAGATATTAAGGGGAATTACGTTGCTTCTAACTATTATAG--- 106
                      **   ** **    *****      *     ** ***    *   * *       *    

consensus_1338#0      TAGGACTAAACAACACTTTGCTTCACGGTTCCCCGAGTTAGGCCGTCATTTCAACCGTCT 360
consensus_1338#1      TAGGATTATTCAA-ATTCTGTTGCTTCATTTCTACTATTAGACATTTACTTTTTTCATC- 164
                      ***** **  *** * * ** * *    ** *     **** *  * * **    * ** 

consensus_1338#0      TGGGCTTCCTCCAAAAATCGGATCTTTCCAGCTTTTTGTTTCTGGTTGTCGAGATGCTGA 420
consensus_1338#1      --------------AGATCGGATCTTTCCAGCTTTTTGTTTCTGGTTGTCGAGATGCTGA 210
                                    * ********************************************

consensus_1338#0      CTATTGGCTACGTCATTTCGATAATGAATCACTTCCTAAGCCTACAGCTTCAGAATTCCG 480
consensus_1338#1      CTATTGGCTACGTCATTTCGATAATGAATCACTTCCTAAGCCTACAGCTTCAGGATTCCG 270
                      ***************************************************** ******

consensus_1338#0      ATTTCAGTTTGAAAAACTTGTTGTACTTGATTATCTTATTCGGAATACAGATCGTGGGAA 540
consensus_1338#1      ATTTCAGTTTGAAAAACTTGTTGTACTTGATTATCTTATTCGGAATACAGGTATACAATA 330
                      ************************************************** *       *

consensus_1338#0      ATGATATTGGCTTATTCGTTATCAA---------------- 565
consensus_1338#1      ATCACGTCAGTTTTTATTTTGACAAGATGTTTTTGTTAATT 371
                      ** *  *  * ** *   **  ***