cluster # 1345

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Schistosoma mansoni
cluster # 1345 cluster # 1345 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1345#0 length = 452 sequences # 1

consensus_1345#1 length = 311 sequences # 1

consensusID : consensus_1345#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 452
fasta sequence

                              [TAGAAGGTTTGATAATGATTTTATTACTAGTGTCATTTTATATCTTGGGAGAGCGTAAGATTTTATCTTATATTCAGTTGCGTAAGGGTCCAAATAAGGTTGGTTTATGTGGATTGGTACCAGAGTTTTGCTGATTTTTTAAAGTTACTGAGAAAGGTGAAAGTGCATGGTTTCAATTTTCGAAGGTGATTTTCAGTATTTGGGTGTATAGTTATGGTAGTATGTTTTTTAGTTAGGGTTGAGATTTACGGAATGTTTCAAAGTGGTATCGATAGGTGGTATGCGTTATTATATTTTTTAGTTGTTTTTTCTTTTTTGGGTTATGGTATACTGTTATTAGGGTGATGTTCATGATCTAAGTATAGGTTAATAAGGTGTATTCGGGTTTCTTTTTCTAAAGTGATGTTTGAAATGATATTTATGTGTATATTAATCTTGTTTGGTTATTTATA]

[+] EMBL BF936132             [TAGAAGGTTTGATAATGATTTTATTACTAGTGTCATTTTATATCTTGGGAGAGCGTAAGATTTTATCTTATATTCAGTTGCGTAAGGGTCCAAATAAGGTTGGTTTATGTGGATTGGTACCAGAGTTTTGCTGATTTTTTAAAGTTACTGAGAAAGGTGAAAGTGCATGGTTTCAATTTTCGAAGGTGATTTTCAGTATTTGGGTGTATAGTTATGGTAGTATGTTTTTTAGTTAGGGTTGAGATTTACGGAATGTTTCAAAGTGGTATCGATAGGTGGTATGCGTTATTATATTTTTTAGTTGTTTTTTCTTTTTTGGGTTATGGTATACTGTTATTAGGGTGATGTTCATGATCTAAGTATAGGTTAATAAGGTGTATTCGGGTTTCTTTTTCTAAAGTGATGTTTGAAATGATATTTATGTGTATATTAATCTTGTTTGGTTATTTATA]




>consensus_1345#0
TAGAAGGTTTGATAATGATTTTATTACTAGTGTCATTTTATATCTTGGGAGAGCGTAAGA
TTTTATCTTATATTCAGTTGCGTAAGGGTCCAAATAAGGTTGGTTTATGTGGATTGGTAC
CAGAGTTTTGCTGATTTTTTAAAGTTACTGAGAAAGGTGAAAGTGCATGGTTTCAATTTT
CGAAGGTGATTTTCAGTATTTGGGTGTATAGTTATGGTAGTATGTTTTTTAGTTAGGGTT
GAGATTTACGGAATGTTTCAAAGTGGTATCGATAGGTGGTATGCGTTATTATATTTTTTA
GTTGTTTTTTCTTTTTTGGGTTATGGTATACTGTTATTAGGGTGATGTTCATGATCTAAG
TATAGGTTAATAAGGTGTATTCGGGTTTCTTTTTCTAAAGTGATGTTTGAAATGATATTT
ATGTGTATATTAATCTTGTTTGGTTATTTATA

consensusID : consensus_1345#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 311
fasta sequence

                              [GTTGGTTTATGTGGATTGGTACAGAGTTTGGCTGATTTTTTAAAGTTATTGGGAAAGGTGANAGTGCATGGTTTCAATTTTCGGAGGTGATTTTCAGTATTTGGGTGTGTAGTTATGGTAGTGTGTCTTTTAGCTAGGGNTGAGATNTATGGGATGTCTCAGAGTAGTATNGANAGATGGTACATGCTATTATATTTNCNAGCTGGCTNCTTCTNCTCCGGGNTATGGTATATTATTATTAGGATGATGNTCANGATCCAAGTATAGATTAATAAGGTNTNTTCGGGNTCCTTTTNCTAAAGTAATGTCGG]

[+] EMBL SM548                [GTTGGTTTATGTGGATTGGTACAGAGTTTGGCTGATTTTTTAAAGTTATTGGGAAAGGTGANAGTGCATGGTTTCAATTTTCGGAGGTGATTTTCAGTATTTGGGTGTGTAGTTATGGTAGTGTGTCTTTTAGCTAGGGNTGAGATNTATGGGATGTCTCAGAGTAGTATNGANAGATGGTACATGCTATTATATTTNCNAGCTGGCTNCTTCTNCTCCGGGNTATGGTATATTATTATTAGGATGATGNTCANGATCCAAGTATAGATTAATAAGGTNTNTTCGGGNTCCTTTTNCTAAAGTAATGTCGG]




>consensus_1345#1
GTTGGTTTATGTGGATTGGTACAGAGTTTGGCTGATTTTTTAAAGTTATTGGGAAAGGTG
ANAGTGCATGGTTTCAATTTTCGGAGGTGATTTTCAGTATTTGGGTGTGTAGTTATGGTA
GTGTGTCTTTTAGCTAGGGNTGAGATNTATGGGATGTCTCAGAGTAGTATNGANAGATGG
TACATGCTATTATATTTNCNAGCTGGCTNCTTCTNCTCCGGGNTATGGTATATTATTATT
AGGATGATGNTCANGATCCAAGTATAGATTAATAAGGTNTNTTCGGGNTCCTTTTNCTAA
AGTAATGTCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1345#0      TAGAAGGTTTGATAATGATTTTATTACTAGTGTCATTTTATATCTTGGGAGAGCGTAAGA 60
consensus_1345#1      ------------------------------------------------------------
                                                                                  

consensus_1345#0      TTTTATCTTATATTCAGTTGCGTAAGGGTCCAAATAAGGTTGGTTTATGTGGATTGGTAC 120
consensus_1345#1      --------------------------------------GTTGGTTTATGTGGATTGGTAC 22
                                                            **********************

consensus_1345#0      CAGAGTTTTGCTGATTTTTTAAAGTTACTGAGAAAGGTGAAAGTGCATGGTTTCAATTTT 180
consensus_1345#1      -AGAGTTTGGCTGATTTTTTAAAGTTATTGGGAAAGGTGANAGTGCATGGTTTCAATTTT 81
                       ******* ****************** ** ********* *******************

consensus_1345#0      CGAAGGTGATTTTCAGTATTTGGGTGTATAGTTATGGTAGTATGTTTTTTAGTTAGGGTT 240
consensus_1345#1      CGGAGGTGATTTTCAGTATTTGGGTGTGTAGTTATGGTAGTGTGTCTTTTAGCTAGGGNT 141
                      ** ************************ ************* *** ****** ***** *

consensus_1345#0      GAGATTTACGGAATGTTTCAAAGTGGTATCGATAGGTGGTATGCGTTATTATATTTTTTA 300
consensus_1345#1      GAGATNTATGGGATGTCTCAGAGTAGTATNGANAGATGGTACATGCTATTATATTTNCNA 201
                      ***** ** ** **** *** *** **** ** ** *****   * **********   *

consensus_1345#0      GTTG-TTTTTTCTTTTTTGGGTTATGGTATACTGTTATTAGGGTGATGTTCATGATCTAA 359
consensus_1345#1      GCTGGCTNCTTCTNCTCCGGGNTATGGTATATTATTATTAGGATGATGNTCANGATCCAA 261
                      * **  *  ****  *  *** ********* * ******** ***** *** **** **

consensus_1345#0      GTATAGGTTAATAAGGTGTATTCGGGTTTCTTTTTCTAAAGTGATGTTTGAAATGATATT 419
consensus_1345#1      GTATAGATTAATAAGGTNTNTTCGGGNTCCTTTTNCTAAAGTAATGTCGG---------- 311
                      ****** ********** * ****** * ***** ******* ****  *          

consensus_1345#0      TATGTGTATATTAATCTTGTTTGGTTATTTATA 452
consensus_1345#1      ---------------------------------