cluster # 1364

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 1364 cluster # 1364 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1364#0 length = 288 sequences # 1

consensus_1364#1 length = 232 sequences # 1

consensusID : consensus_1364#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 288
fasta sequence

                              [AGCAATCATTTATTAAATAAAATCAAATTTTTCATCTTCATTGCTAAAAAAAGACATTGGGATATTCATCATTGGTTGTGTGTGTACGTGTAGGTGGTTTTTTTTTCACTAAATATGTATATGCGTGTCTGTTTGAAACACTTACACATGCATTAGTATGGTATGCATAAAAGAATTATGAAGCGAATATTTTCCAAACTGAAATGTGTGATAGTAATAATAATAGAGGAGAACAAGAACAATGATAATAGTAATATTAGTTCTCTTTTAGTAAATCATTATGACAGG]

[+] EMBL BF936473             [AGCAATCATTTATTAAATAAAATCAAATTTTTCATCTTCATTGCTAAAAAAAGACATTGGGATATTCATCATTGGTTGTGTGTGTACGTGTAGGTGGTTTTTTTTTCACTAAATATGTATATGCGTGTCTGTTTGAAACACTTACACATGCATTAGTATGGTATGCATAAAAGAATTATGAAGCGAATATTTTCCAAACTGAAATGTGTGATAGTAATAATAATAGAGGAGAACAAGAACAATGATAATAGTAATATTAGTTCTCTTTTAGTAAATCATTATGACAGG]




>consensus_1364#0
AGCAATCATTTATTAAATAAAATCAAATTTTTCATCTTCATTGCTAAAAAAAGACATTGG
GATATTCATCATTGGTTGTGTGTGTACGTGTAGGTGGTTTTTTTTTCACTAAATATGTAT
ATGCGTGTCTGTTTGAAACACTTACACATGCATTAGTATGGTATGCATAAAAGAATTATG
AAGCGAATATTTTCCAAACTGAAATGTGTGATAGTAATAATAATAGAGGAGAACAAGAAC
AATGATAATAGTAATATTAGTTCTCTTTTAGTAAATCATTATGACAGG

consensusID : consensus_1364#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 232
fasta sequence

                              [TAAGGATTTCCCCATATTTATTTATTTCCTGATAATCCTTCCAATAAATTTTGGTGGCGGTAAAAGGAATCATTTATTAAATAAAATCAAATTTTTCATCTTCATTGCTAAAACAAGACCACTTCCCTCCTATTCATCAATTGGTTGTGTGTGTACGTGTAGGGTTGGTTTTTTTTTCACTAAATATGTATAATGGGTGTCTGTTTGATACACTTACACATGCATTAGTATG]

[+] EMBL SMAA28900            [TAAGGATTTCCCCATATTTATTTATTTCCTGATAATCCTTCCAATAAATTTTGGTGGCGGTAAAAGGAATCATTTATTAAATAAAATCAAATTTTTCATCTTCATTGCTAAAACAAGACCACTTCCCTCCTATTCATCAATTGGTTGTGTGTGTACGTGTAGGGTTGGTTTTTTTTTCACTAAATATGTATAATGGGTGTCTGTTTGATACACTTACACATGCATTAGTATG]




>consensus_1364#1
TAAGGATTTCCCCATATTTATTTATTTCCTGATAATCCTTCCAATAAATTTTGGTGGCGG
TAAAAGGAATCATTTATTAAATAAAATCAAATTTTTCATCTTCATTGCTAAAACAAGACC
ACTTCCCTCCTATTCATCAATTGGTTGTGTGTGTACGTGTAGGGTTGGTTTTTTTTTCAC
TAAATATGTATAATGGGTGTCTGTTTGATACACTTACACATGCATTAGTATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1364#0      ------------------------------------------------------------
consensus_1364#1      TAAGGATTTCCCCATATTTATTTATTTCCTGATAATCCTTCCAATAAATTTTGGTGGCGG 60
                                                                                  

consensus_1364#0      ----AGCAATCATTTATTAAATAAAATCAAATTTTTCATCTTCATTGCTAAAAAAAGACA 56
consensus_1364#1      TAAAAGGAATCATTTATTAAATAAAATCAAATTTTTCATCTTCATTGCTAAAACAAGACC 120
                          ** ********************************************** ***** 

consensus_1364#0      ----TTGGGATATTCATCA-TTGGTTGTGTGTGTACGTGTAGG--TGGTTTTTTTTTCAC 109
consensus_1364#1      ACTTCCCTCCTATTCATCAATTGGTTGTGTGTGTACGTGTAGGGTTGGTTTTTTTTTCAC 180
                                ********* ***********************  ***************

consensus_1364#0      TAAATATGTATA-TGCGTGTCTGTTTGAAACACTTACACATGCATTAGTATGGTATGCAT 168
consensus_1364#1      TAAATATGTATAATGGGTGTCTGTTTGATACACTTACACATGCATTAGTATG-------- 232
                      ************ ** ************ ***********************        

consensus_1364#0      AAAAGAATTATGAAGCGAATATTTTCCAAACTGAAATGTGTGATAGTAATAATAATAGAG 228
consensus_1364#1      ------------------------------------------------------------
                                                                                  

consensus_1364#0      GAGAACAAGAACAATGATAATAGTAATATTAGTTCTCTTTTAGTAAATCATTATGACAGG 288
consensus_1364#1      ------------------------------------------------------------