cluster # 1411

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Schistosoma mansoni
cluster # 1411 cluster # 1411 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1411#0 length = 656 sequences # 1

consensus_1411#1 length = 461 sequences # 1

consensusID : consensus_1411#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 656
fasta sequence

                              [AACTGGTGGCCTAACTAGTTACTGTTTTCAAACAAGATTTACAGATGAATTATGGCTTCGCGGCATGTTCCTTACACGGATATGTCAGATATGGGACGAGCAGCACAGGAGACTGAAATACAACGCGCTGCCAATCAACAGCTAATTGAAGAAGGTAGAGTAATTAAGCACAAGGAGCTTGAAAAAATGAGACGTGAAGAGGAAAATAAGGATGACAGTAGTAGTGAGCGTCCTGACGTTATCATCAAGGTTAATAATGGAAGCACTTCACGCCTGAGTAGCCAGCGTTCTTCGGCCGACTTAGCATCATCAATCAGCTCAAGGAATTTGGATGCACGTGAGCTACGAGCCCAATTACTGCAGTTGGAAGAAAAAGTTAAGGGGGCAATGTTATCAAATGTTCAACTAGACAATGACAAACAACTTTTGAAGTATGAAGTTGATTTGCTCAAAGATAAATTGGAAGATCTCACAGATGCTTATGCCTCTTTGAACAAAACCTTCTTAGAAACAAACGGGAATTAGCTTATCAAGAAATGCAAATTGTTGAATTAACACATCGTTTGGATTATGCACGTCATCAAGTAGAAGCACGTGATCAACTAATTGNTGAACATGGTTTANTATTAATTGGTGGGCACAATGCAGATGACAAT]

[+] EMBL CD201751             [AACTGGTGGCCTAACTAGTTACTGTTTTCAAACAAGATTTACAGATGAATTATGGCTTCGCGGCATGTTCCTTACACGGATATGTCAGATATGGGACGAGCAGCACAGGAGACTGAAATACAACGCGCTGCCAATCAACAGCTAATTGAAGAAGGTAGAGTAATTAAGCACAAGGAGCTTGAAAAAATGAGACGTGAAGAGGAAAATAAGGATGACAGTAGTAGTGAGCGTCCTGACGTTATCATCAAGGTTAATAATGGAAGCACTTCACGCCTGAGTAGCCAGCGTTCTTCGGCCGACTTAGCATCATCAATCAGCTCAAGGAATTTGGATGCACGTGAGCTACGAGCCCAATTACTGCAGTTGGAAGAAAAAGTTAAGGGGGCAATGTTATCAAATGTTCAACTAGACAATGACAAACAACTTTTGAAGTATGAAGTTGATTTGCTCAAAGATAAATTGGAAGATCTCACAGATGCTTATGCCTCTTTGAACAAAACCTTCTTAGAAACAAACGGGAATTAGCTTATCAAGAAATGCAAATTGTTGAATTAACACATCGTTTGGATTATGCACGTCATCAAGTAGAAGCACGTGATCAACTAATTGNTGAACATGGTTTANTATTAATTGGTGGGCACAATGCAGATGACAAT]




>consensus_1411#0
AACTGGTGGCCTAACTAGTTACTGTTTTCAAACAAGATTTACAGATGAATTATGGCTTCG
CGGCATGTTCCTTACACGGATATGTCAGATATGGGACGAGCAGCACAGGAGACTGAAATA
CAACGCGCTGCCAATCAACAGCTAATTGAAGAAGGTAGAGTAATTAAGCACAAGGAGCTT
GAAAAAATGAGACGTGAAGAGGAAAATAAGGATGACAGTAGTAGTGAGCGTCCTGACGTT
ATCATCAAGGTTAATAATGGAAGCACTTCACGCCTGAGTAGCCAGCGTTCTTCGGCCGAC
TTAGCATCATCAATCAGCTCAAGGAATTTGGATGCACGTGAGCTACGAGCCCAATTACTG
CAGTTGGAAGAAAAAGTTAAGGGGGCAATGTTATCAAATGTTCAACTAGACAATGACAAA
CAACTTTTGAAGTATGAAGTTGATTTGCTCAAAGATAAATTGGAAGATCTCACAGATGCT
TATGCCTCTTTGAACAAAACCTTCTTAGAAACAAACGGGAATTAGCTTATCAAGAAATGC
AAATTGTTGAATTAACACATCGTTTGGATTATGCACGTCATCAAGTAGAAGCACGTGATC
AACTAATTGNTGAACATGGTTTANTATTAATTGGTGGGCACAATGCAGATGACAAT

consensusID : consensus_1411#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 461
fasta sequence

                              [CCAATCAACAGCTAATTGAAGAAGGTAGAGTAATTAAGCACAAGGAGCTTGAAAAAATGAGACGTGAAGAGGAAAATAAGGATGACAGTAGTAGTGAGCGTCCTGACGTTATCATCAAGTTACAATCGTGCATATTTTAATTTCTTGTATTAGGAGTTTTAGAAATTTCAAATATCAGGTAGAGCAATAAAACATAAAATGTGGCTTATGTATCAACTTAATTCGCCTCGCTTCACGACAGGCTAACAAAAGGGAATCGAAAGGCGGAAAAGCGACAAGGTCAATATTATTGTAGATTATGGGAAACTGCGAAGACTAGTAACCAGAGAATGGAAAGTATACAATAATCCTCTTTGATATTTAGATTTACACCACTCACTGCAATCAATTTTAAACTGTAGCACCTAGTATCCACCAATTAGTTACGAATATTTCGTGACCGGTAGACGGTTTTCCAGTTT]

[-] EMBL CD190181             [CCAATCAACAGCTAATTGAAGAAGGTAGAGTAATTAAGCACAAGGAGCTTGAAAAAATGAGACGTGAAGAGGAAAATAAGGATGACAGTAGTAGTGAGCGTCCTGACGTTATCATCAAGTTACAATCGTGCATATTTTAATTTCTTGTATTAGGAGTTTTAGAAATTTCAAATATCAGGTAGAGCAATAAAACATAAAATGTGGCTTATGTATCAACTTAATTCGCCTCGCTTCACGACAGGCTAACAAAAGGGAATCGAAAGGCGGAAAAGCGACAAGGTCAATATTATTGTAGATTATGGGAAACTGCGAAGACTAGTAACCAGAGAATGGAAAGTATACAATAATCCTCTTTGATATTTAGATTTACACCACTCACTGCAATCAATTTTAAACTGTAGCACCTAGTATCCACCAATTAGTTACGAATATTTCGTGACCGGTAGACGGTTTTCCAGTTT]




>consensus_1411#1
CCAATCAACAGCTAATTGAAGAAGGTAGAGTAATTAAGCACAAGGAGCTTGAAAAAATGA
GACGTGAAGAGGAAAATAAGGATGACAGTAGTAGTGAGCGTCCTGACGTTATCATCAAGT
TACAATCGTGCATATTTTAATTTCTTGTATTAGGAGTTTTAGAAATTTCAAATATCAGGT
AGAGCAATAAAACATAAAATGTGGCTTATGTATCAACTTAATTCGCCTCGCTTCACGACA
GGCTAACAAAAGGGAATCGAAAGGCGGAAAAGCGACAAGGTCAATATTATTGTAGATTAT
GGGAAACTGCGAAGACTAGTAACCAGAGAATGGAAAGTATACAATAATCCTCTTTGATAT
TTAGATTTACACCACTCACTGCAATCAATTTTAAACTGTAGCACCTAGTATCCACCAATT
AGTTACGAATATTTCGTGACCGGTAGACGGTTTTCCAGTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1411#0      AACTGGTGGCCTAACTAGTTACTGTTTTCAAACAAGATTTACAGATGAATTATGGCTTCG 60
consensus_1411#1      ------------------------------------------------------------
                                                                                  

consensus_1411#0      CGGCATGTTCCTTACACGGATATGTCAGATATGGGACGAGCAGCACAGGAGACTGAAATA 120
consensus_1411#1      ------------------------------------------------------------
                                                                                  

consensus_1411#0      CAACGCGCTGCCAATCAACAGCTAATTGAAGAAGGTAGAGTAATTAAGCACAAGGAGCTT 180
consensus_1411#1      ----------CCAATCAACAGCTAATTGAAGAAGGTAGAGTAATTAAGCACAAGGAGCTT 50
                                **************************************************

consensus_1411#0      GAAAAAATGAGACGTGAAGAGGAAAATAAGGATGACAGTAGTAGTGAGCGTCCTGACGTT 240
consensus_1411#1      GAAAAAATGAGACGTGAAGAGGAAAATAAGGATGACAGTAGTAGTGAGCGTCCTGACGTT 110
                      ************************************************************

consensus_1411#0      ATCATCAAGGTTAATAATGGAAGCACTTCACGCCTGAGTAGCCAGCGTTCTTCGGCCGAC 300
consensus_1411#1      ATCATCAAG-TTACAATCGTGCATATTTTAATTTCTTGTATTAGGAGTTTTAGA---AAT 166
                      ********* ***  *  *     * ** *       ***    * *** *       * 

consensus_1411#0      TTAGCATCATCAATCAGCTCAAGGAAT--TTGGATGCACGTGAGCTACGAGCCCAATTAC 358
consensus_1411#1      TTCAAAT-ATCAGGTAGAGCAATAAAACATAAAATGTGGCTTATGTATCAACTTAATTCG 225
                      **   ** ****   **  ***  **   *   ***    * *  **  * *  ****  

consensus_1411#0      TGCAGTTGGAAGAAAAAGTTAAGGGGGCAATGTTATCAAATGTTCAACTAGACAATGACA 418
consensus_1411#1      CCTCGCTTCACGACAG-GCTAACAAAAGGGAATCGAAAGGCGGAAAAGC-GACAAGGTCA 283
                          * *  * ** *  * ***          *    *   *   **   ***** * **

consensus_1411#0      AACAACTTTTGAAGTATGAAGTTGATTTGCTCAAAG-ATAAATTGGAAGATCTCACAGAT 477
consensus_1411#1      ATATTATTGTAGATTATGGGA---AACTGCGAAGACTAGTAACCAGAGAATGGAAAGTAT 340
                      *     ** *  * ****      *  ***  * *  *  **   **  **   *   **

consensus_1411#0      GCT-TATGCCTCTTTGAACAAAACCTTCTTAGAAACAAACGGGAATTAGCTTATCAAGAA 536
consensus_1411#1      ACAATAATCCTCTTTGATATTTAGATTTACACCA-CTCACTGCAATCAATTT-TAAACTG 398
                       *  **  *********     *  **   *  * *  ** * *** *  ** * **   

consensus_1411#0      ATGCAAATTGTTGAATTAACACATCGTTTGGATTATGCACGTCATCAAGTAGAAGCACGT 596
consensus_1411#1      TAGCACCTAGT--ATCCACCAATTAGTTACGAATATTT-CGTGACCG-GTAGA------C 448
                        ***  * **  *   * **  * ***  ** ***   *** * *  *****       

consensus_1411#0      GATCAACTAATTGNTGAACATGGTTTANTATTAATTGGTGGGCACAATGCAGATGACAAT 656
consensus_1411#1      GGTTTTCCAGTTT----------------------------------------------- 461
                      * *   * * **