cluster # 1451

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Schistosoma mansoni
cluster # 1451 cluster # 1451 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1451#0 length = 521 sequences # 1

consensus_1451#1 length = 168 sequences # 1

consensusID : consensus_1451#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 521
fasta sequence

                              [ATCAAAGTGTAGTACAGGGACACCTTTTTCTACAAATGGCATATGATCATCACCAATCTGGTAGTGAACAGCATGGCCAAAATAGGGTTTATTATTTTCACTTGATGATTTCAATAGATTAAAAGATCTCATTCTCCTTTCCAGTTCAATGAGCATATTAAAACTTCCTTTATCCTCATAACGGATACTTTGGTATGTGAGGTTGTTTTGCACCAAGTAAATCCAATAAGACAAGAAGATCAATTTTACTCAATTCTGTTTCATTAGATGATTTGAATGTTGTACTGTTCCATTTTTTAGCTAAATGTCGAGATCCATATAAGCTATCAGTATCTGTCCACTGGTTGAAAGCTTCTTCTCCATCAAAAAATATCAGCTTCAAACCAATATCAGATTTCTTCAGTGCTTTAATCCCATAGTTAAGCATGTCGACAATTATCAAAATAATTGAACAAGGCATTGCTGAATCTGTTGATCCAACACAATTAGGGAGACGTTTTGATTCATAATGACCAGCCCAA]

[+] EMBL CD060852             [ATCAAAGTGTAGTACAGGGACACCTTTTTCTACAAATGGCATATGATCATCACCAATCTGGTAGTGAACAGCATGGCCAAAATAGGGTTTATTATTTTCACTTGATGATTTCAATAGATTAAAAGATCTCATTCTCCTTTCCAGTTCAATGAGCATATTAAAACTTCCTTTATCCTCATAACGGATACTTTGGTATGTGAGGTTGTTTTGCACCAAGTAAATCCAATAAGACAAGAAGATCAATTTTACTCAATTCTGTTTCATTAGATGATTTGAATGTTGTACTGTTCCATTTTTTAGCTAAATGTCGAGATCCATATAAGCTATCAGTATCTGTCCACTGGTTGAAAGCTTCTTCTCCATCAAAAAATATCAGCTTCAAACCAATATCAGATTTCTTCAGTGCTTTAATCCCATAGTTAAGCATGTCGACAATTATCAAAATAATTGAACAAGGCATTGCTGAATCTGTTGATCCAACACAATTAGGGAGACGTTTTGATTCATAATGACCAGCCCAA]




>consensus_1451#0
ATCAAAGTGTAGTACAGGGACACCTTTTTCTACAAATGGCATATGATCATCACCAATCTG
GTAGTGAACAGCATGGCCAAAATAGGGTTTATTATTTTCACTTGATGATTTCAATAGATT
AAAAGATCTCATTCTCCTTTCCAGTTCAATGAGCATATTAAAACTTCCTTTATCCTCATA
ACGGATACTTTGGTATGTGAGGTTGTTTTGCACCAAGTAAATCCAATAAGACAAGAAGAT
CAATTTTACTCAATTCTGTTTCATTAGATGATTTGAATGTTGTACTGTTCCATTTTTTAG
CTAAATGTCGAGATCCATATAAGCTATCAGTATCTGTCCACTGGTTGAAAGCTTCTTCTC
CATCAAAAAATATCAGCTTCAAACCAATATCAGATTTCTTCAGTGCTTTAATCCCATAGT
TAAGCATGTCGACAATTATCAAAATAATTGAACAAGGCATTGCTGAATCTGTTGATCCAA
CACAATTAGGGAGACGTTTTGATTCATAATGACCAGCCCAA

consensusID : consensus_1451#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 168
fasta sequence

                              [CTATCAGTATCTGTCCACTGGTTGAAAGCTTCTTCTCCATCTTTTTATATCAGCTTCAAACCAATATCAGATTTCTTCAGTGCTTTAATGCCGTAGTTAAGCATGTCGCACATTTTCAAATAATTGAACAAGGCATTGCTGAATCTGTTGATCCAACAAAATTAGGGA]

[-] EMBL SM015                [CTATCAGTATCTGTCCACTGGTTGAAAGCTTCTTCTCCATCTTTTTATATCAGCTTCAAACCAATATCAGATTTCTTCAGTGCTTTAATGCCGTAGTTAAGCATGTCGCACATTTTCAAATAATTGAACAAGGCATTGCTGAATCTGTTGATCCAACAAAATTAGGGA]




>consensus_1451#1
CTATCAGTATCTGTCCACTGGTTGAAAGCTTCTTCTCCATCTTTTTATATCAGCTTCAAA
CCAATATCAGATTTCTTCAGTGCTTTAATGCCGTAGTTAAGCATGTCGCACATTTTCAAA
TAATTGAACAAGGCATTGCTGAATCTGTTGATCCAACAAAATTAGGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1451#0      ATCAAAGTGTAGTACAGGGACACCTTTTTCTACAAATGGCATATGATCATCACCAATCTG 60
consensus_1451#1      ------------------------------------------------------------
                                                                                  

consensus_1451#0      GTAGTGAACAGCATGGCCAAAATAGGGTTTATTATTTTCACTTGATGATTTCAATAGATT 120
consensus_1451#1      ------------------------------------------------------------
                                                                                  

consensus_1451#0      AAAAGATCTCATTCTCCTTTCCAGTTCAATGAGCATATTAAAACTTCCTTTATCCTCATA 180
consensus_1451#1      ------------------------------------------------------------
                                                                                  

consensus_1451#0      ACGGATACTTTGGTATGTGAGGTTGTTTTGCACCAAGTAAATCCAATAAGACAAGAAGAT 240
consensus_1451#1      ------------------------------------------------------------
                                                                                  

consensus_1451#0      CAATTTTACTCAATTCTGTTTCATTAGATGATTTGAATGTTGTACTGTTCCATTTTTTAG 300
consensus_1451#1      ------------------------------------------------------------
                                                                                  

consensus_1451#0      CTAAATGTCGAGATCCATATAAGCTATCAGTATCTGTCCACTGGTTGAAAGCTTCTTCTC 360
consensus_1451#1      -----------------------CTATCAGTATCTGTCCACTGGTTGAAAGCTTCTTCTC 37
                                             *************************************

consensus_1451#0      CATCAAAAAATATCAGCTTCAAACCAATATCAGATTTCTTCAGTGCTTTAATCCCATAGT 420
consensus_1451#1      CATCTTTTTATATCAGCTTCAAACCAATATCAGATTTCTTCAGTGCTTTAATGCCGTAGT 97
                      ****     ******************************************* ** ****

consensus_1451#0      TAAGCATGTCGACAATTATCAAAATAATTGAACAAGGCATTGCTGAATCTGTTGATCCAA 480
consensus_1451#1      TAAGCATGTCGCACATTTTCAAA-TAATTGAACAAGGCATTGCTGAATCTGTTGATCCAA 156
                      ***********   *** ***** ************************************

consensus_1451#0      CACAATTAGGGAGACGTTTTGATTCATAATGACCAGCCCAA 521
consensus_1451#1      CAAAATTAGGGA----------------------------- 168
                      ** *********