cluster # 147

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Schistosoma mansoni
cluster # 147 cluster # 147 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_147#0 length = 358 sequences # 1

consensus_147#1 length = 330 sequences # 1

consensusID : consensus_147#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 358
fasta sequence

                              [AATTTTGGGAACTGACTTGGGTAAAACAGGTCCTCCCTTATGATAAAATCACACCATCGCACTCCATTGATTTTAAAACAGGTTCTCCCCTATGATGAAATCACACCATTGCACGCCATTGATTTTAAAACAGGTTCTCCCCTACGATGAAATCACACCATCGCACTCCATTGATTTTAAAACGTCTGTCTGTCCACCCCCCATAGCAACGGTAATCTATTAATCCTAGGAATTTCAGAAAATATGTTTTAAAGAAAAAATTAAACCATCCTTTTATCCTATTCACCCAGGAAAACCATGGTTCATTCCAACAAATTTTCCCAATGGCACTGTATTTAAAAAACACTTGTAAACAAAT]

[+] EMBL AI444565             [AATTTTGGGAACTGACTTGGGTAAAACAGGTCCTCCCTTATGATAAAATCACACCATCGCACTCCATTGATTTTAAAACAGGTTCTCCCCTATGATGAAATCACACCATTGCACGCCATTGATTTTAAAACAGGTTCTCCCCTACGATGAAATCACACCATCGCACTCCATTGATTTTAAAACGTCTGTCTGTCCACCCCCCATAGCAACGGTAATCTATTAATCCTAGGAATTTCAGAAAATATGTTTTAAAGAAAAAATTAAACCATCCTTTTATCCTATTCACCCAGGAAAACCATGGTTCATTCCAACAAATTTTCCCAATGGCACTGTATTTAAAAAACACTTGTAAACAAAT]




>consensus_147#0
AATTTTGGGAACTGACTTGGGTAAAACAGGTCCTCCCTTATGATAAAATCACACCATCGC
ACTCCATTGATTTTAAAACAGGTTCTCCCCTATGATGAAATCACACCATTGCACGCCATT
GATTTTAAAACAGGTTCTCCCCTACGATGAAATCACACCATCGCACTCCATTGATTTTAA
AACGTCTGTCTGTCCACCCCCCATAGCAACGGTAATCTATTAATCCTAGGAATTTCAGAA
AATATGTTTTAAAGAAAAAATTAAACCATCCTTTTATCCTATTCACCCAGGAAAACCATG
GTTCATTCCAACAAATTTTCCCAATGGCACTGTATTTAAAAAACACTTGTAAACAAAT

consensusID : consensus_147#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 330
fasta sequence

                              [AATTTTGGGAACTGACTTGGGTAAAACAGGTCCTCCCTTATGATAAAATCACACCATCGCACTGACATTGATTTTAAAACAGGTTCTCCCCTATGATGAAATCACACCATTGCACGCCATTGATTTTAAAACAGGTTCTCCCCTACGATGAAATCACACCATCGCACTCCATTGATTTTAAAACGGTCTGGTCTGTCCACCCCCCATAGCACGGGAATCTATTAATCGTAGGGAATTCAGGAAATATGTTTAAAAGAAAAATTAAACGATCGTTTATCGTACAGCACGAGAAAACAAGGGTCAGATCGATTATATTTCGTATGGGGTGGT]

[+] EMBL AI820483             [AATTTTGGGAACTGACTTGGGTAAAACAGGTCCTCCCTTATGATAAAATCACACCATCGCACTGACATTGATTTTAAAACAGGTTCTCCCCTATGATGAAATCACACCATTGCACGCCATTGATTTTAAAACAGGTTCTCCCCTACGATGAAATCACACCATCGCACTCCATTGATTTTAAAACGGTCTGGTCTGTCCACCCCCCATAGCACGGGAATCTATTAATCGTAGGGAATTCAGGAAATATGTTTAAAAGAAAAATTAAACGATCGTTTATCGTACAGCACGAGAAAACAAGGGTCAGATCGATTATATTTCGTATGGGGTGGT]




>consensus_147#1
AATTTTGGGAACTGACTTGGGTAAAACAGGTCCTCCCTTATGATAAAATCACACCATCGC
ACTGACATTGATTTTAAAACAGGTTCTCCCCTATGATGAAATCACACCATTGCACGCCAT
TGATTTTAAAACAGGTTCTCCCCTACGATGAAATCACACCATCGCACTCCATTGATTTTA
AAACGGTCTGGTCTGTCCACCCCCCATAGCACGGGAATCTATTAATCGTAGGGAATTCAG
GAAATATGTTTAAAAGAAAAATTAAACGATCGTTTATCGTACAGCACGAGAAAACAAGGG
TCAGATCGATTATATTTCGTATGGGGTGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_147#0      AATTTTGGGAACTGACTTGGGTAAAACAGGTCCTCCCTTATGATAAAATCACACCATCGC 60
consensus_147#1      AATTTTGGGAACTGACTTGGGTAAAACAGGTCCTCCCTTATGATAAAATCACACCATCGC 60
                     ************************************************************

consensus_147#0      ACTC-CATTGATTTTAAAACAGGTTCTCCCCTATGATGAAATCACACCATTGCACGCCAT 119
consensus_147#1      ACTGACATTGATTTTAAAACAGGTTCTCCCCTATGATGAAATCACACCATTGCACGCCAT 120
                     ***  *******************************************************

consensus_147#0      TGATTTTAAAACAGGTTCTCCCCTACGATGAAATCACACCATCGCACTCCATTGATTTTA 179
consensus_147#1      TGATTTTAAAACAGGTTCTCCCCTACGATGAAATCACACCATCGCACTCCATTGATTTTA 180
                     ************************************************************

consensus_147#0      AAACG-TCTG-TCTGTCCACCCCCCATAGCAACGGTAATCTATTAATCCTAGGAATTTCA 237
consensus_147#1      AAACGGTCTGGTCTGTCCACCCCCCATAGCA-CGGGAATCTATTAATCGTAGGGAATTCA 239
                     ***** **** ******************** *** ************ **** * ****

consensus_147#0      GAAAATATGTTTTAAAGAAAAAATTAAACCATCCTTTTATCCTATTCACCCAGGAAAACC 297
consensus_147#1      GGAAATATGTTTAAAAGAAAAA-TTAAACGATCGTTT-ATCGTACA-GCACGAGAAAACA 296
                     * ********** ********* ****** *** *** *** **    * *  ****** 

consensus_147#0      ATGGTTCATTCCAACAAATTTTCCCAATGGCACTGTATTTAAAAAACACTTGTAAACAAA 357
consensus_147#1      AGGGTCAGATCGATTATATTTCGT--ATGGGGTGGT------------------------ 330
                     * ***    ** *  * ****     ****    **                        

consensus_147#0      T 358
consensus_147#1      -