cluster # 1559

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 1559 cluster # 1559 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1559#0 length = 230 sequences # 1

consensus_1559#1 length = 116 sequences # 1

consensusID : consensus_1559#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 230
fasta sequence

                              [ATTGACTTGAACTAAAATCACTATTTGGAAAATAACGTCCATGATCAAAACGATGTACTGATATGTATAATATATTTGGATCATCTTCAAATATTTCCGCTGTACCAATACCATGATGAACATCCCAGTCAATAATTGCAATCCGTTCTAGTCCATAGACTTGTTGAGCATGTCTAGCACCGATTGCCACATTATTGAAAAAACAAAATCCCATACAACGATCTTTTAAA]

[+] EMBL CD180640             [ATTGACTTGAACTAAAATCACTATTTGGAAAATAACGTCCATGATCAAAACGATGTACTGATATGTATAATATATTTGGATCATCTTCAAATATTTCCGCTGTACCAATACCATGATGAACATCCCAGTCAATAATTGCAATCCGTTCTAGTCCATAGACTTGTTGAGCATGTCTAGCACCGATTGCCACATTATTGAAAAAACAAAATCCCATACAACGATCTTTTAAA]




>consensus_1559#0
ATTGACTTGAACTAAAATCACTATTTGGAAAATAACGTCCATGATCAAAACGATGTACTG
ATATGTATAATATATTTGGATCATCTTCAAATATTTCCGCTGTACCAATACCATGATGAA
CATCCCAGTCAATAATTGCAATCCGTTCTAGTCCATAGACTTGTTGAGCATGTCTAGCAC
CGATTGCCACATTATTGAAAAAACAAAATCCCATACAACGATCTTTTAAA

consensusID : consensus_1559#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 116
fasta sequence

                              [CTCTAAAAGATCGCTGTATGGGATTTTGTTATTTCAATTATTGACTGGGATGTTCATCATGGTAATGGACCAGCGGAAATATTTGAAAATGATCCAAATATATTATACATATCAAT]

[+] EMBL CD163043             [CTCTAAAAGATCGCTGTATGGGATTTTGTTATTTCAATTATTGACTGGGATGTTCATCATGGTAATGGACCAGCGGAAATATTTGAAAATGATCCAAATATATTATACATATCAAT]




>consensus_1559#1
CTCTAAAAGATCGCTGTATGGGATTTTGTTATTTCAATTATTGACTGGGATGTTCATCAT
GGTAATGGACCAGCGGAAATATTTGAAAATGATCCAAATATATTATACATATCAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1559#0      ATTGACTTGAACTAAAATCACTATTTGGAAAATAACGTCCATGATCAAAACGATGTACTG 60
consensus_1559#1      -----CTCTAA--AAGATCGCTGTATGGGAT------TTTGTTATTTCAATTATTGACTG 47
                           **  **  ** *** ** * *** *       *   * **   **  **  ****

consensus_1559#0      ATATGTATAATATATT--TGGATCATCTTCAAATATTTCCGCTGTACCAATACCATGATG 118
consensus_1559#1      GGATGTTCATCATGGTAATGGACCAGCGG-AAATATTTGAAAATGATCCAAAT-ATATTA 105
                        ****  *  **  *  **** ** *   ********       * * * *  **  * 

consensus_1559#0      AACATCCCAGTCAATAATTGCAATCCGTTCTAGTCCATAGACTTGTTGAGCATGTCTAGC 178
consensus_1559#1      TACATATCAAT------------------------------------------------- 116
                       ****  ** *                                                 

consensus_1559#0      ACCGATTGCCACATTATTGAAAAAACAAAATCCCATACAACGATCTTTTAAA 230
consensus_1559#1      ----------------------------------------------------