cluster # 1602

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Schistosoma mansoni
cluster # 1602 cluster # 1602 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1602#0 length = 619 sequences # 1

consensus_1602#1 length = 313 sequences # 1

consensusID : consensus_1602#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 619
fasta sequence

                              [TTTTACATCGTAGGTAATGACTAGACGATCTAAATCATCCATACGTTTTCTACTAGAGTTGACTTTTACTTTCGGCAAATTACTATTACTATCATTAGAAGCATTGACACTTGTACATTCAGTTAATTCACTAACAGATTCCTCTCGATTACTTCTTGGTATAAGATGATCATAATAAAGATTTACAATATGTTCCAATGTATTTACATTTGACACTAAAGATCTGAAACCTCGACGTTCAAATATTTCTAGTAGTTGGTCTATTGACATTTATTCCGGACAATATAAATCAACAGTAACACCACATTTGGGCAAATATTCTGAAACTTTTGGTTTCGACTCATTTTTTTCTTCTTTTTTCATCTGGTCTAAAGTCTGGAAATTAAAAACCCTTTGGAATACATAGAATGATAATGTTGACATTTTGTGAAAATAATAAAGTGAGCATAATAAGATTAACCTGGTTGATTTTAACACATACTACACAATCTTAACAAGCACTGACTTCTACTCCTCTGACTTAATCTCATGAGTTAGAAATGTAACCAACTAAATGCATTTAGTTGGCTTACATAGATCCTTGATGTTAGCAAATATATAAAGCAGCATCCNCGCTATT]

[+] EMBL CD091387             [TTTTACATCGTAGGTAATGACTAGACGATCTAAATCATCCATACGTTTTCTACTAGAGTTGACTTTTACTTTCGGCAAATTACTATTACTATCATTAGAAGCATTGACACTTGTACATTCAGTTAATTCACTAACAGATTCCTCTCGATTACTTCTTGGTATAAGATGATCATAATAAAGATTTACAATATGTTCCAATGTATTTACATTTGACACTAAAGATCTGAAACCTCGACGTTCAAATATTTCTAGTAGTTGGTCTATTGACATTTATTCCGGACAATATAAATCAACAGTAACACCACATTTGGGCAAATATTCTGAAACTTTTGGTTTCGACTCATTTTTTTCTTCTTTTTTCATCTGGTCTAAAGTCTGGAAATTAAAAACCCTTTGGAATACATAGAATGATAATGTTGACATTTTGTGAAAATAATAAAGTGAGCATAATAAGATTAACCTGGTTGATTTTAACACATACTACACAATCTTAACAAGCACTGACTTCTACTCCTCTGACTTAATCTCATGAGTTAGAAATGTAACCAACTAAATGCATTTAGTTGGCTTACATAGATCCTTGATGTTAGCAAATATATAAAGCAGCATCCNCGCTATT]




>consensus_1602#0
TTTTACATCGTAGGTAATGACTAGACGATCTAAATCATCCATACGTTTTCTACTAGAGTT
GACTTTTACTTTCGGCAAATTACTATTACTATCATTAGAAGCATTGACACTTGTACATTC
AGTTAATTCACTAACAGATTCCTCTCGATTACTTCTTGGTATAAGATGATCATAATAAAG
ATTTACAATATGTTCCAATGTATTTACATTTGACACTAAAGATCTGAAACCTCGACGTTC
AAATATTTCTAGTAGTTGGTCTATTGACATTTATTCCGGACAATATAAATCAACAGTAAC
ACCACATTTGGGCAAATATTCTGAAACTTTTGGTTTCGACTCATTTTTTTCTTCTTTTTT
CATCTGGTCTAAAGTCTGGAAATTAAAAACCCTTTGGAATACATAGAATGATAATGTTGA
CATTTTGTGAAAATAATAAAGTGAGCATAATAAGATTAACCTGGTTGATTTTAACACATA
CTACACAATCTTAACAAGCACTGACTTCTACTCCTCTGACTTAATCTCATGAGTTAGAAA
TGTAACCAACTAAATGCATTTAGTTGGCTTACATAGATCCTTGATGTTAGCAAATATATA
AAGCAGCATCCNCGCTATT

consensusID : consensus_1602#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 313
fasta sequence

                              [CTAACAGATTCCTCTCGATTACTTCTTGGTATAAGATGATCATAATAAAGATTTACAATATGTTCCAATGTATTTACATTTGACACTAAAGATTTGAAACCTCGACGTTCAAATATTTCTAGTAGTTGGTCTATTGACATTTGTTCCGGACAATATAAATCAACAGTAACACCACATTTGGGCAAATATTCTGAAACTTTTGGTTTCGACTCATTTTTTTCTTCTTTTTTCATCTGGTCTAAAGTTTGCTGTTACATTATTAAGGGCTCGACAACTGACAGTCTCTTAACCCCTCGGACCGAATTCTTCGCCG]

[-] EMBL CD077656             [CTAACAGATTCCTCTCGATTACTTCTTGGTATAAGATGATCATAATAAAGATTTACAATATGTTCCAATGTATTTACATTTGACACTAAAGATTTGAAACCTCGACGTTCAAATATTTCTAGTAGTTGGTCTATTGACATTTGTTCCGGACAATATAAATCAACAGTAACACCACATTTGGGCAAATATTCTGAAACTTTTGGTTTCGACTCATTTTTTTCTTCTTTTTTCATCTGGTCTAAAGTTTGCTGTTACATTATTAAGGGCTCGACAACTGACAGTCTCTTAACCCCTCGGACCGAATTCTTCGCCG]




>consensus_1602#1
CTAACAGATTCCTCTCGATTACTTCTTGGTATAAGATGATCATAATAAAGATTTACAATA
TGTTCCAATGTATTTACATTTGACACTAAAGATTTGAAACCTCGACGTTCAAATATTTCT
AGTAGTTGGTCTATTGACATTTGTTCCGGACAATATAAATCAACAGTAACACCACATTTG
GGCAAATATTCTGAAACTTTTGGTTTCGACTCATTTTTTTCTTCTTTTTTCATCTGGTCT
AAAGTTTGCTGTTACATTATTAAGGGCTCGACAACTGACAGTCTCTTAACCCCTCGGACC
GAATTCTTCGCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1602#0      TTTTACATCGTAGGTAATGACTAGACGATCTAAATCATCCATACGTTTTCTACTAGAGTT 60
consensus_1602#1      ------------------------------------------------------------
                                                                                  

consensus_1602#0      GACTTTTACTTTCGGCAAATTACTATTACTATCATTAGAAGCATTGACACTTGTACATTC 120
consensus_1602#1      ------------------------------------------------------------
                                                                                  

consensus_1602#0      AGTTAATTCACTAACAGATTCCTCTCGATTACTTCTTGGTATAAGATGATCATAATAAAG 180
consensus_1602#1      ----------CTAACAGATTCCTCTCGATTACTTCTTGGTATAAGATGATCATAATAAAG 50
                                **************************************************

consensus_1602#0      ATTTACAATATGTTCCAATGTATTTACATTTGACACTAAAGATCTGAAACCTCGACGTTC 240
consensus_1602#1      ATTTACAATATGTTCCAATGTATTTACATTTGACACTAAAGATTTGAAACCTCGACGTTC 110
                      ******************************************* ****************

consensus_1602#0      AAATATTTCTAGTAGTTGGTCTATTGACATTTATTCCGGACAATATAAATCAACAGTAAC 300
consensus_1602#1      AAATATTTCTAGTAGTTGGTCTATTGACATTTGTTCCGGACAATATAAATCAACAGTAAC 170
                      ******************************** ***************************

consensus_1602#0      ACCACATTTGGGCAAATATTCTGAAACTTTTGGTTTCGACTCATTTTTTTCTTCTTTTTT 360
consensus_1602#1      ACCACATTTGGGCAAATATTCTGAAACTTTTGGTTTCGACTCATTTTTTTCTTCTTTTTT 230
                      ************************************************************

consensus_1602#0      CATCTGGTCTAAAGTCTGGAAATTAAAAACCCTTTGGAATACATAGAATGATAATGTTGA 420
consensus_1602#1      CATCTGGTCTAAAGTTTGCTGTT---ACATTATTAAGGGCTCGACAACTGACAGTCTCTT 287
                      *************** **    *   * *   **  *    *    * *** * * *   

consensus_1602#0      CATTTTGTGAAAATAATAAAGTGAGCATAATAAGATTAACCTGGTTGATTTTAACACATA 480
consensus_1602#1      AACCCCTCGGACCGAATTCTTCGCCG---------------------------------- 313
                       *      * *   ***     *                                     

consensus_1602#0      CTACACAATCTTAACAAGCACTGACTTCTACTCCTCTGACTTAATCTCATGAGTTAGAAA 540
consensus_1602#1      ------------------------------------------------------------
                                                                                  

consensus_1602#0      TGTAACCAACTAAATGCATTTAGTTGGCTTACATAGATCCTTGATGTTAGCAAATATATA 600
consensus_1602#1      ------------------------------------------------------------
                                                                                  

consensus_1602#0      AAGCAGCATCCNCGCTATT 619
consensus_1602#1      -------------------