cluster # 1626

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Schistosoma mansoni
cluster # 1626 cluster # 1626 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1626#0 length = 425 sequences # 1

consensus_1626#1 length = 270 sequences # 1

consensusID : consensus_1626#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 425
fasta sequence

                              [ACGAGGCGTAGCGTACTTTTACTTGACTATACTAAACCTTTAAATAAACCTTAAGTTATTTTTCATACCTTGGTTCTTTTTTAAAGGGTTGATGATCAAATCCTTAGTGTCAATGACATCAGTTTAGAGCATGTTACAAATATGGAAGCAGTGAAAACATTAAGACAAGCTGGTAATCAACTACATTTAGTTGTGAGACGATTTGTTGGTAATACTGGAGTAGCAACACCGGATAGAACAGTTGTGCAACATTCTCCATCCTATCGATCACCGGAAGTCATGTCTGATTTAGAGGACAGTGGTTCAACTCCAATATGGTACGAAGTTCAACTCCGTAAACCACGTTCAAATTATGGCCTCGGTTTCAGTATTGCTGGTGGTCAAGATGTTGAGAATGAAAACTTTCCTTCAACTGGAATATTTAT]

[+] EMBL CD084143             [ACGAGGCGTAGCGTACTTTTACTTGACTATACTAAACCTTTAAATAAACCTTAAGTTATTTTTCATACCTTGGTTCTTTTTTAAAGGGTTGATGATCAAATCCTTAGTGTCAATGACATCAGTTTAGAGCATGTTACAAATATGGAAGCAGTGAAAACATTAAGACAAGCTGGTAATCAACTACATTTAGTTGTGAGACGATTTGTTGGTAATACTGGAGTAGCAACACCGGATAGAACAGTTGTGCAACATTCTCCATCCTATCGATCACCGGAAGTCATGTCTGATTTAGAGGACAGTGGTTCAACTCCAATATGGTACGAAGTTCAACTCCGTAAACCACGTTCAAATTATGGCCTCGGTTTCAGTATTGCTGGTGGTCAAGATGTTGAGAATGAAAACTTTCCTTCAACTGGAATATTTAT]




>consensus_1626#0
ACGAGGCGTAGCGTACTTTTACTTGACTATACTAAACCTTTAAATAAACCTTAAGTTATT
TTTCATACCTTGGTTCTTTTTTAAAGGGTTGATGATCAAATCCTTAGTGTCAATGACATC
AGTTTAGAGCATGTTACAAATATGGAAGCAGTGAAAACATTAAGACAAGCTGGTAATCAA
CTACATTTAGTTGTGAGACGATTTGTTGGTAATACTGGAGTAGCAACACCGGATAGAACA
GTTGTGCAACATTCTCCATCCTATCGATCACCGGAAGTCATGTCTGATTTAGAGGACAGT
GGTTCAACTCCAATATGGTACGAAGTTCAACTCCGTAAACCACGTTCAAATTATGGCCTC
GGTTTCAGTATTGCTGGTGGTCAAGATGTTGAGAATGAAAACTTTCCTTCAACTGGAATA
TTTAT

consensusID : consensus_1626#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 270
fasta sequence

                              [TCGGTCCGAGGGTTTCAATAAAAGGAGAATGGGAATATCTGGATATTATACTTAAACGTGATTCAACTGCAGTAGGTGGATTTGGTTTTAGTATTGCCGGAGGGATTGATAATCCTATTACGGACGTGGATCATGGAATTTATGTCACAAGAATAGCGCCTAATGGATGCGCAGATCGAGATGGTAAACTAAGGGTTGATGATCAAATCCTTAGTGTCAATGACATCAGTTTAGAGCATGTTACANATATGGAAGCAGTGAAAACATTTA]

[+] EMBL CD077744             [TCGGTCCGAGGGTTTCAATAAAAGGAGAATGGGAATATCTGGATATTATACTTAAACGTGATTCAACTGCAGTAGGTGGATTTGGTTTTAGTATTGCCGGAGGGATTGATAATCCTATTACGGACGTGGATCATGGAATTTATGTCACAAGAATAGCGCCTAATGGATGCGCAGATCGAGATGGTAAACTAAGGGTTGATGATCAAATCCTTAGTGTCAATGACATCAGTTTAGAGCATGTTACANATATGGAAGCAGTGAAAACATTTA]




>consensus_1626#1
TCGGTCCGAGGGTTTCAATAAAAGGAGAATGGGAATATCTGGATATTATACTTAAACGTG
ATTCAACTGCAGTAGGTGGATTTGGTTTTAGTATTGCCGGAGGGATTGATAATCCTATTA
CGGACGTGGATCATGGAATTTATGTCACAAGAATAGCGCCTAATGGATGCGCAGATCGAG
ATGGTAAACTAAGGGTTGATGATCAAATCCTTAGTGTCAATGACATCAGTTTAGAGCATG
TTACANATATGGAAGCAGTGAAAACATTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1626#0      ACGAGGCGTAGCGTACTTTTACTTGACTATACTAAACCTTTAAATAAACCTTAAGTTATT 60
consensus_1626#1      ------------------------------------------------------------
                                                                                  

consensus_1626#0      TTTCATACCTTGGTTCTTTTTTAAAGGGTTGATGATCAAATCCTTAGTGTCAATGACATC 120
consensus_1626#1      ----------------------------------------------------------TC 2
                                                                                **

consensus_1626#0      AGTTTAGAGCATGTTACAAATATGGAAGCAGTGAAAACATTAAGACAAGCTGGTAATCAA 180
consensus_1626#1      GGTCCGAGG---GTTTCAATAAAAGGAG-AATGGGAATATCTGGATATTATACTTA--AA 56
                       **     *   *** ***  *  * ** * **  ** **   ** *   *  * *  **

consensus_1626#0      CTACATTTAGTTGTGAGACGATTTGTTGGTAATACTGGAGTAGCAACACCGGATAGAACA 240
consensus_1626#1      CGTGATTCAACTGCAGTAGGTGGATTTGGTTTTA--------GTATTGCCGGAGGGATTG 108
                      *   *** *  **    * *     *****  **        * *   *****  **   

consensus_1626#0      GTTGTGCAACATTCTCCATCCTATCGATCACCGGAAGTCATGTCTGATTTAGAGGACAGT 300
consensus_1626#1      ATAATCC--TATTACGGA---CGTGGATCAT-GGAATTTATGTCACA-----AGAATAGC 157
                       *  * *   ***    *     * *****  **** * *****  *     ** * ** 

consensus_1626#0      GGTTCAACTCCAATATGGTACGAAGTTCAACTCCGTAAACCACG--TTCA-AATTATGGC 357
consensus_1626#1      G-------CCTAATG-GATGCGCAGATCGAGATGGTAAACTAAGGGTTGATGATCAAATC 209
                      *        * ***  * * ** ** ** *    ****** * *  ** *  ** *   *

consensus_1626#0      CTCGGTTTCAGTATTGCTGGTGGTCAAGATGTTGAGAATGAAAACTTTCCTTCAACTGGA 417
consensus_1626#1      CTTAGTGTCAATGACATCAGTTTAGAGCATGTTACANATATGGAAG------CAGTGAAA 263
                      **  ** *** *       **    *  *****    **    *        **     *

consensus_1626#0      ATATTTAT 425
consensus_1626#1      ACATTTA- 270
                      * *****