cluster # 1628

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Schistosoma mansoni
cluster # 1628 cluster # 1628 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1628#0 length = 441 sequences # 1

consensus_1628#1 length = 247 sequences # 1

consensusID : consensus_1628#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 441
fasta sequence

                              [ACGCCGAATACCAGGCCCTCTACGAAACCATCGGGCGTGAACACAGCGACGAGATGGAGCGCCTGACCCTGGAGGCGTTGCGCGAGCACGGACTGGCGAGCTGAACCCAACTAGGCTGCGGCCCTGAGCCAGGCCGAAACAGGTGGCGAACGGGCTGCTGCGTCGAAAATGTCCGATTGACAGTCAGCCCTATCACCTTTACGTTAACGTAAAGGTGAACAATCACTCACACCCACGCCTTGCTCAACCCATAACAACAGGTGCCCCATGAGCTGTCCGACCCTGAACTTCGCCCTCGGTGAAACCCTCGACATGCTTCGCGACCAGGTGCGGACCTTCGTCGCCCGGGAAGGGAAAGACAGCTTCCATCGAGTATTTCCTGCTCACTGAAAGCCGAATTGAGCGCCAAGCCCATGCAACCTGCCGTTAGCACGCCTGGCC]

[+] EMBL CD163484             [ACGCCGAATACCAGGCCCTCTACGAAACCATCGGGCGTGAACACAGCGACGAGATGGAGCGCCTGACCCTGGAGGCGTTGCGCGAGCACGGACTGGCGAGCTGAACCCAACTAGGCTGCGGCCCTGAGCCAGGCCGAAACAGGTGGCGAACGGGCTGCTGCGTCGAAAATGTCCGATTGACAGTCAGCCCTATCACCTTTACGTTAACGTAAAGGTGAACAATCACTCACACCCACGCCTTGCTCAACCCATAACAACAGGTGCCCCATGAGCTGTCCGACCCTGAACTTCGCCCTCGGTGAAACCCTCGACATGCTTCGCGACCAGGTGCGGACCTTCGTCGCCCGGGAAGGGAAAGACAGCTTCCATCGAGTATTTCCTGCTCACTGAAAGCCGAATTGAGCGCCAAGCCCATGCAACCTGCCGTTAGCACGCCTGGCC]




>consensus_1628#0
ACGCCGAATACCAGGCCCTCTACGAAACCATCGGGCGTGAACACAGCGACGAGATGGAGC
GCCTGACCCTGGAGGCGTTGCGCGAGCACGGACTGGCGAGCTGAACCCAACTAGGCTGCG
GCCCTGAGCCAGGCCGAAACAGGTGGCGAACGGGCTGCTGCGTCGAAAATGTCCGATTGA
CAGTCAGCCCTATCACCTTTACGTTAACGTAAAGGTGAACAATCACTCACACCCACGCCT
TGCTCAACCCATAACAACAGGTGCCCCATGAGCTGTCCGACCCTGAACTTCGCCCTCGGT
GAAACCCTCGACATGCTTCGCGACCAGGTGCGGACCTTCGTCGCCCGGGAAGGGAAAGAC
AGCTTCCATCGAGTATTTCCTGCTCACTGAAAGCCGAATTGAGCGCCAAGCCCATGCAAC
CTGCCGTTAGCACGCCTGGCC

consensusID : consensus_1628#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 247
fasta sequence

                              [GCTTACGTTAACGTAAAGGTGAGCGCCCTCCCCCGCGCCCCACCCACACAACAACAAAGCTCACATTAAGGTGCCTGTCCATGAGTTACCCGTCCCTGAACTTCGCCCTCGGTGAAACCATCGACATGCTGCGCGACCAGGTGCAGTCGTTCGTGGCGAAGGAGATCGCGCCCCGCGCGGCGCAGATCGACATCGACAACCTGTTCCCTGCCGACCTGTGGCGCAAGTTCGGGGACATGGGCCTCTT]

[+] EMBL CD165018             [GCTTACGTTAACGTAAAGGTGAGCGCCCTCCCCCGCGCCCCACCCACACAACAACAAAGCTCACATTAAGGTGCCTGTCCATGAGTTACCCGTCCCTGAACTTCGCCCTCGGTGAAACCATCGACATGCTGCGCGACCAGGTGCAGTCGTTCGTGGCGAAGGAGATCGCGCCCCGCGCGGCGCAGATCGACATCGACAACCTGTTCCCTGCCGACCTGTGGCGCAAGTTCGGGGACATGGGCCTCTT]




>consensus_1628#1
GCTTACGTTAACGTAAAGGTGAGCGCCCTCCCCCGCGCCCCACCCACACAACAACAAAGC
TCACATTAAGGTGCCTGTCCATGAGTTACCCGTCCCTGAACTTCGCCCTCGGTGAAACCA
TCGACATGCTGCGCGACCAGGTGCAGTCGTTCGTGGCGAAGGAGATCGCGCCCCGCGCGG
CGCAGATCGACATCGACAACCTGTTCCCTGCCGACCTGTGGCGCAAGTTCGGGGACATGG
GCCTCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1628#0      ACGCCGAATACCAGGCCCTCTACGAAACCATCGGGCGTGAACACAGCGACGAGATGGAGC 60
consensus_1628#1      ------------------------------------------------------------
                                                                                  

consensus_1628#0      GCCTGACCCTGGAGGCGTTGCGCGAGCACGGACTGGCGAGCTGAACCCAACTAGGCTGCG 120
consensus_1628#1      ------------------------------------------------------------
                                                                                  

consensus_1628#0      GCCCTGAGCCAGGCCGAAACAGGTGGCGAACGGGCTGCTGCGTCGAAAATGTCCGATTGA 180
consensus_1628#1      ------------------------------------------------------------
                                                                                  

consensus_1628#0      CAGTCAGCCCTATCACCTTTACGTTAACGTAAAGGTGAACAATCACTCACACCCACGCCT 240
consensus_1628#1      ----------------GCTTACGTTAACGTAAAGGTGAGCGCCCTCCCCCGCGCCCCACC 44
                                        ******************** *   * * * * * * *  * 

consensus_1628#0      TGCTCAAC--CCATAACAACA----GGTGCC---CCATGAGCTGTCCGACCCTGAACTTC 291
consensus_1628#1      CACACAACAACAAAGCTCACATTAAGGTGCCTGTCCATGAGTTACCCGTCCCTGAACTTC 104
                        * ****  * *     ***    ******   ******* *  *** ***********

consensus_1628#0      GCCCTCGGTGAAACCCTCGACATGCTTCGCGACCAGGTGCGGACCTTCGTCGCCCGGGAA 351
consensus_1628#1      GCCCTCGGTGAAACCATCGACATGCTGCGCGACCAGGTGCAGTCGTTCGTGGC----GAA 160
                      *************** ********** ************* * * ***** **    ***

consensus_1628#0      GGGAAAGACAGCTTCCATCGAGTATTTCCTGCTCACTGAAAGCCGAATTGAGCGCCAAGC 411
consensus_1628#1      GGAGATCGCGCCCCGCGCGGCGCAGATCGA---CATCGACAACCTG-TTCCCTGCCGACC 216
                      **  *   *  *   *   * * *  **     **  ** * **   **    *** * *

consensus_1628#0      CCATGCAACCTGCCGTTAGCACGCCTGGCC- 441
consensus_1628#1      TGTGGCGCAAGTTCGGGGACATGGGCCTCTT 247
                          **       **    ** *     *