cluster # 1631

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Schistosoma mansoni
cluster # 1631 cluster # 1631 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1631#0 length = 359 sequences # 1

consensus_1631#1 length = 339 sequences # 1

consensusID : consensus_1631#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 359
fasta sequence

                              [GTAATTTGATCAGGCTGGGACCTGACATSAGATGTAGAAGGAGGACGCCAGTTAGCACATTGGCAATGACTGTACTGGGCCAGAAACACGTTGTAGTCTGTGCAAAGTTGTAGTAGACGGTCACCGTTATCGGGCACAGTGATGATAAATGAATTAGTGTCACTATCTCGAAACATCGACTTCGGTGACCTAGAAATCAGCTCGCCTATGGTGATAATGCTGTCCTATCTAAACGATCTCAAGTTACTGACTGGTATAAACTAATGCTACCAGTGAGTACGAATVTGAAGCAGTCTTTCTGAAATCGSGTATGTCATTCAAGCTAGCCTTCATCGGTCGGTTCTTAGGAAAGCCNAAGG]

[+] EMBL SM1247331            [GTAATTTGATCAGGCTGGGACCTGACATSAGATGTAGAAGGAGGACGCCAGTTAGCACATTGGCAATGACTGTACTGGGCCAGAAACACGTTGTAGTCTGTGCAAAGTTGTAGTAGACGGTCACCGTTATCGGGCACAGTGATGATAAATGAATTAGTGTCACTATCTCGAAACATCGACTTCGGTGACCTAGAAATCAGCTCGCCTATGGTGATAATGCTGTCCTATCTAAACGATCTCAAGTTACTGACTGGTATAAACTAATGCTACCAGTGAGTACGAATVTGAAGCAGTCTTTCTGAAATCGSGTATGTCATTCAAGCTAGCCTTCATCGGTCGGTTCTTAGGAAAGCCNAAGG]




>consensus_1631#0
GTAATTTGATCAGGCTGGGACCTGACATSAGATGTAGAAGGAGGACGCCAGTTAGCACAT
TGGCAATGACTGTACTGGGCCAGAAACACGTTGTAGTCTGTGCAAAGTTGTAGTAGACGG
TCACCGTTATCGGGCACAGTGATGATAAATGAATTAGTGTCACTATCTCGAAACATCGAC
TTCGGTGACCTAGAAATCAGCTCGCCTATGGTGATAATGCTGTCCTATCTAAACGATCTC
AAGTTACTGACTGGTATAAACTAATGCTACCAGTGAGTACGAATVTGAAGCAGTCTTTCT
GAAATCGSGTATGTCATTCAAGCTAGCCTTCATCGGTCGGTTCTTAGGAAAGCCNAAGG

consensusID : consensus_1631#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 339
fasta sequence

                              [GTAATTTGATCAGGCTGGGACCTGACATGAGATGTAGAAGGAGGACGCCAGTTAGCACATTGGCAATGACTGTACTGGCCAGAAACACGTTGTAGTCTGTGCAAAGTTGTAGTAGACGGTCACCGTTATCGGGCACAGTGATGATAAATGAATTAGTGTCACTATCTCGAAACATCGACTTCGGTGACCTAGAAATCAGCTCGCCTATGGTGATAATGCTGTCCTATCTAAACGATCTYYMAAAAGGTTTTAAACCTTTKGGHMNCTGGTATAAACTAATGCTACAGTGAGTACGAATCTGAAGCAGTCTTTCTGAAATCGCGTATGTCATTCAAGCTA]

[+] EMBL SM1247329            [GTAATTTGATCAGGCTGGGACCTGACATGAGATGTAGAAGGAGGACGCCAGTTAGCACATTGGCAATGACTGTACTGGCCAGAAACACGTTGTAGTCTGTGCAAAGTTGTAGTAGACGGTCACCGTTATCGGGCACAGTGATGATAAATGAATTAGTGTCACTATCTCGAAACATCGACTTCGGTGACCTAGAAATCAGCTCGCCTATGGTGATAATGCTGTCCTATCTAAACGATCTYYMAAAAGGTTTTAAACCTTTKGGHMNCTGGTATAAACTAATGCTACAGTGAGTACGAATCTGAAGCAGTCTTTCTGAAATCGCGTATGTCATTCAAGCTA]




>consensus_1631#1
GTAATTTGATCAGGCTGGGACCTGACATGAGATGTAGAAGGAGGACGCCAGTTAGCACAT
TGGCAATGACTGTACTGGCCAGAAACACGTTGTAGTCTGTGCAAAGTTGTAGTAGACGGT
CACCGTTATCGGGCACAGTGATGATAAATGAATTAGTGTCACTATCTCGAAACATCGACT
TCGGTGACCTAGAAATCAGCTCGCCTATGGTGATAATGCTGTCCTATCTAAACGATCTYY
MAAAAGGTTTTAAACCTTTKGGHMNCTGGTATAAACTAATGCTACAGTGAGTACGAATCT
GAAGCAGTCTTTCTGAAATCGCGTATGTCATTCAAGCTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1631#0      GTAATTTGATCAGGCTGGGACCTGACATSAGATGTAGAAGGAGGACGCCAGTTAGCACAT 60
consensus_1631#1      GTAATTTGATCAGGCTGGGACCTGACATGAGATGTAGAAGGAGGACGCCAGTTAGCACAT 60
                      **************************** *******************************

consensus_1631#0      TGGCAATGACTGTACTGGGCCAGAAACACGTTGTAGTCTGTGCAAAGTTGTAGTAGACGG 120
consensus_1631#1      TGGCAATGACTGTACTGG-CCAGAAACACGTTGTAGTCTGTGCAAAGTTGTAGTAGACGG 119
                      ****************** *****************************************

consensus_1631#0      TCACCGTTATCGGGCACAGTGATGATAAATGAATTAGTGTCACTATCTCGAAACATCGAC 180
consensus_1631#1      TCACCGTTATCGGGCACAGTGATGATAAATGAATTAGTGTCACTATCTCGAAACATCGAC 179
                      ************************************************************

consensus_1631#0      TTCGGTGACCTAGAAATCAGCTCGCCTATGGTGATAATGCTGTCCTATCTAAACGATCTC 240
consensus_1631#1      TTCGGTGACCTAGAAATCAGCTCGCCTATGGTGATAATGCTGTCCTATCTAAACGATCTY 239
                      *********************************************************** 

consensus_1631#0      AAG----------------TTACTGACTGGTATAAACTAATGCTACCAGTGAGTACGAAT 284
consensus_1631#1      YMAAAAGGTTTTAAACCTTTKGGHMNCTGGTATAAACTAATGCTAC-AGTGAGTACGAAT 298
                                         *      ******************** *************

consensus_1631#0      VTGAAGCAGTCTTTCTGAAATCGSGTATGTCATTCAAGCTAGCCTTCATCGGTCGGTTCT 344
consensus_1631#1      CTGAAGCAGTCTTTCTGAAATCGCGTATGTCATTCAAGCTA------------------- 339
                       ********************** *****************                   

consensus_1631#0      TAGGAAAGCCNAAGG 359
consensus_1631#1      ---------------