cluster # 1645

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Schistosoma mansoni
cluster # 1645 cluster # 1645 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1645#0 length = 271 sequences # 1

consensus_1645#1 length = 101 sequences # 1

consensusID : consensus_1645#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 271
fasta sequence

                              [GAGTTGGGAAGTATAGAATCAGACGTTCGAAATTTCTTTGTGCGTTCTCAGTAATTACAAACCGATACAAGCAGCTAATCAATATATAAATAGAAGCAAATATAATGAGATCAAGCGAAATCAGTTTCAAAACACCTCCTCTCCATTTTAAGAGAAGGCGGAAAAATATTCCAGGACCTCCCGTAAGGACAAACTGATTGTACTGGACAGTCATCAATAAATTTTTCTTGCACGTTTTCACCAGAATATGATATCACTGAACGATCCCGAT]

[+] EMBL CD061964             [GAGTTGGGAAGTATAGAATCAGACGTTCGAAATTTCTTTGTGCGTTCTCAGTAATTACAAACCGATACAAGCAGCTAATCAATATATAAATAGAAGCAAATATAATGAGATCAAGCGAAATCAGTTTCAAAACACCTCCTCTCCATTTTAAGAGAAGGCGGAAAAATATTCCAGGACCTCCCGTAAGGACAAACTGATTGTACTGGACAGTCATCAATAAATTTTTCTTGCACGTTTTCACCAGAATATGATATCACTGAACGATCCCGAT]




>consensus_1645#0
GAGTTGGGAAGTATAGAATCAGACGTTCGAAATTTCTTTGTGCGTTCTCAGTAATTACAA
ACCGATACAAGCAGCTAATCAATATATAAATAGAAGCAAATATAATGAGATCAAGCGAAA
TCAGTTTCAAAACACCTCCTCTCCATTTTAAGAGAAGGCGGAAAAATATTCCAGGACCTC
CCGTAAGGACAAACTGATTGTACTGGACAGTCATCAATAAATTTTTCTTGCACGTTTTCA
CCAGAATATGATATCACTGAACGATCCCGAT

consensusID : consensus_1645#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 101
fasta sequence

                              [TATTTCCGCCTTCTCTGAAATGGAGAGGAGGTGTTTGAAACTGATTGTACTGGACAGTCATCAATAAATTTTTCTTGCACGTTTTCACCAGAATATGATAT]

[+] EMBL CD061762             [TATTTCCGCCTTCTCTGAAATGGAGAGGAGGTGTTTGAAACTGATTGTACTGGACAGTCATCAATAAATTTTTCTTGCACGTTTTCACCAGAATATGATAT]




>consensus_1645#1
TATTTCCGCCTTCTCTGAAATGGAGAGGAGGTGTTTGAAACTGATTGTACTGGACAGTCA
TCAATAAATTTTTCTTGCACGTTTTCACCAGAATATGATAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1645#0      GAGTTGGGAAGTATAGAATCAGACGTTCGAAATTTCTTTGTGCGTTCTCAGTAATTACAA 60
consensus_1645#1      ------------------------------------------------------------
                                                                                  

consensus_1645#0      ACCGATACAAGCAGCTAATCAATATATAAATAGAAGCAAATATAATGAGATCAAGCGAAA 120
consensus_1645#1      ------------------------------------------------------------
                                                                                  

consensus_1645#0      TCAGTTTCAAAACACCTCCTCTCCATTTTAAGAGAAGGCGGAAAAATATTCCAGGACCTC 180
consensus_1645#1      ---------------TATTTCCGCCTTCTCTGAAATGGAGAGGAGGTGTTTGA------- 38
                                         **  * ** *  ** * ** *   *  * **  *       

consensus_1645#0      CCGTAAGGACAAACTGATTGTACTGGACAGTCATCAATAAATTTTTCTTGCACGTTTTCA 240
consensus_1645#1      -----------AACTGATTGTACTGGACAGTCATCAATAAATTTTTCTTGCACGTTTTCA 87
                                 *************************************************

consensus_1645#0      CCAGAATATGATATCACTGAACGATCCCGAT 271
consensus_1645#1      CCAGAATATGATAT----------------- 101
                      **************