cluster # 1647

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 1647 cluster # 1647 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1647#0 length = 384 sequences # 1

consensus_1647#1 length = 365 sequences # 1

consensusID : consensus_1647#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 384
fasta sequence

                              [TAATGCGCTAGTTAAATCTTTCAAGGTGTTTGACAATAGAATAGGGCAAACTAAAAATGGAGCATCACTCAGGTAAATACCACTTGAATGAGTATTGGAGAATATTGCATATGCGAAATTCACCCAATTAGACAGAATGTTGTGCTGATATGTGATTTGTTCACAACCAGAAACGGGCAAAACTTTACTTTCAGTCAGATAAGTAATTTGATCGTAAGTGGCAAACTGCAAAATATGAGTCCGAAAATCCAGTGTAGGGCTATGAAGCACCATTGAAGCAATAGCTCCTGGACCAAAGTGTTTATAATGTATTTTGACAATGTCTTTTATTATGCGACATATATAAGGATCACTCCTCCAATTTAATTGGGCGATACCGCGTGT]

[+] EMBL CD158498             [TAATGCGCTAGTTAAATCTTTCAAGGTGTTTGACAATAGAATAGGGCAAACTAAAAATGGAGCATCACTCAGGTAAATACCACTTGAATGAGTATTGGAGAATATTGCATATGCGAAATTCACCCAATTAGACAGAATGTTGTGCTGATATGTGATTTGTTCACAACCAGAAACGGGCAAAACTTTACTTTCAGTCAGATAAGTAATTTGATCGTAAGTGGCAAACTGCAAAATATGAGTCCGAAAATCCAGTGTAGGGCTATGAAGCACCATTGAAGCAATAGCTCCTGGACCAAAGTGTTTATAATGTATTTTGACAATGTCTTTTATTATGCGACATATATAAGGATCACTCCTCCAATTTAATTGGGCGATACCGCGTGT]




>consensus_1647#0
TAATGCGCTAGTTAAATCTTTCAAGGTGTTTGACAATAGAATAGGGCAAACTAAAAATGG
AGCATCACTCAGGTAAATACCACTTGAATGAGTATTGGAGAATATTGCATATGCGAAATT
CACCCAATTAGACAGAATGTTGTGCTGATATGTGATTTGTTCACAACCAGAAACGGGCAA
AACTTTACTTTCAGTCAGATAAGTAATTTGATCGTAAGTGGCAAACTGCAAAATATGAGT
CCGAAAATCCAGTGTAGGGCTATGAAGCACCATTGAAGCAATAGCTCCTGGACCAAAGTG
TTTATAATGTATTTTGACAATGTCTTTTATTATGCGACATATATAAGGATCACTCCTCCA
ATTTAATTGGGCGATACCGCGTGT

consensusID : consensus_1647#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 365
fasta sequence

                              [CGTCTCTCACTAATGTGAACAGGCTGAAAGAAATACTATTTTAGACCAAAATATGCGACAAGATTGCATGAAGGATCCATGGTTTTCTTATCCAGGTTACAGCAGAGCTCGAGGATACGAGATCTTGTTTCCTTACAAGTCACCGATGCGACTGCTTCTTTATACATTTTAAGAATATGTATACTGTGTTTGCGGCTATCAGAATTTAATGCGCTAGTTAAATCTTTCAAGGTGTTTGACAATAGAATAGGGCAAACTAAAAATGGAGCATCACTCAGGTAAATACCACTTGAATGAGTATTGGAGAATATTGCATATGCGAAATTCACCCAATTAGACAGAATGTTGTGCTGCCTCGGACCGAA]

[-] EMBL CD077803             [CGTCTCTCACTAATGTGAACAGGCTGAAAGAAATACTATTTTAGACCAAAATATGCGACAAGATTGCATGAAGGATCCATGGTTTTCTTATCCAGGTTACAGCAGAGCTCGAGGATACGAGATCTTGTTTCCTTACAAGTCACCGATGCGACTGCTTCTTTATACATTTTAAGAATATGTATACTGTGTTTGCGGCTATCAGAATTTAATGCGCTAGTTAAATCTTTCAAGGTGTTTGACAATAGAATAGGGCAAACTAAAAATGGAGCATCACTCAGGTAAATACCACTTGAATGAGTATTGGAGAATATTGCATATGCGAAATTCACCCAATTAGACAGAATGTTGTGCTGCCTCGGACCGAA]




>consensus_1647#1
CGTCTCTCACTAATGTGAACAGGCTGAAAGAAATACTATTTTAGACCAAAATATGCGACA
AGATTGCATGAAGGATCCATGGTTTTCTTATCCAGGTTACAGCAGAGCTCGAGGATACGA
GATCTTGTTTCCTTACAAGTCACCGATGCGACTGCTTCTTTATACATTTTAAGAATATGT
ATACTGTGTTTGCGGCTATCAGAATTTAATGCGCTAGTTAAATCTTTCAAGGTGTTTGAC
AATAGAATAGGGCAAACTAAAAATGGAGCATCACTCAGGTAAATACCACTTGAATGAGTA
TTGGAGAATATTGCATATGCGAAATTCACCCAATTAGACAGAATGTTGTGCTGCCTCGGA
CCGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1647#0      TAATGCGCTAGTTAAATCTTTCAAGGTGTTTGACAATAGAATAGGGCAAACTAAAAATGG 60
consensus_1647#1      --------------------------CGTCTCTCACTAATGT-GAACAGGCTGAAA--GA 31
                                                 ** *  ** **   * *  **  ** ***  * 

consensus_1647#0      AGCATCACTCAGGTAAATACCACTTGA-ATGAGTATTGGAGAATATTGCATATGCGAAAT 119
consensus_1647#1      AATACTATTTTAGACCAAAATATGCGACAAGATTGCATGAAGGATCCATGGTTTTCTTAT 91
                      *  *  * *   *   * *  *   ** * ** *    **            *     **

consensus_1647#0      TCACCCAATTAGACAGAATGTTGTGCTGATATGTGATTTGTTCACAAC---CAGAAACGG 176
consensus_1647#1      CCAGGTTACAGCAGAGCTCGAGGATACGAGATCTTGTTTCCTTACAAGTCACCGATGCGA 151
                       **    *    * **   *  *    ** ** *  ***  * ****    * **  ** 

consensus_1647#0      GCAAAACTTTAC---TTTCAGTCAGATAAGTAATTTGATCGTAAGTGGCAAACTGCAAAA 233
consensus_1647#1      CTGCTTCTTTATACATTTTAAGAATATGTATACTGTGTTTGCGGCTATCAGAATTTAATG 211
                            *****    *** *   * **   ** * ** * *    *  ** * *  **  

consensus_1647#0      TATGAGTCCGAAAATCCAGTGTAGGGCTATGAAGCACCATTGAAGCAATAGCTCCTGGAC 293
consensus_1647#1      CGCTAGTT---AAATCTTTCAAGGTGTTTGACAATAGAATAGGGCAAACTAAAAATGGAG 268
                          ***    *****       * * *    *  *  ** *    **       **** 

consensus_1647#0      CAAAGTGTTTATAA-TGTATTTTGACAATGTCTTTTATTATGCGACATATATAAGGATCA 352
consensus_1647#1      CATCACTCAGGTAAATACCACTTGAATGAGTATTGGAGAATATTGCATATGCGAAATTCA 328
                      **         *** *     ****    ** **  *  **    *****   *   ***

consensus_1647#0      CTCCTCCAATTTAATTGG-GCGATACCGCGTGT---- 384
consensus_1647#1      CCCAATTAGACAGAATGTTGTGCTGCCTCGGACCGAA 365
                      * *    *     * **  * * * ** **