cluster # 1768

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Schistosoma mansoni
cluster # 1768 cluster # 1768 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1768#0 length = 592 sequences # 1

consensus_1768#1 length = 364 sequences # 1

consensusID : consensus_1768#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 592
fasta sequence

                              [AACACGTGTTGACCACTGACAACCAGTTGGATGCAACTGTTGTAATCCTTTGATTGTCCTCTGGATGATGGTGGACATTTGCGACTTTAATTGTATCTTTACAGTTTTATTGTCTTTAGAGCTTAAACTCTTACTCAACATGTTATCGATATTATTCTACGTGTAGTATTTATTTGTATATTCTGAAGATACAGCGATGCTCATGTAGTGGTGGTTGTTTTCTTCCTTAATTTTGTGCTTAAGAAATTTTAAATTTCAATAGGGAATTGAAATGTTTTAAAAATTGTTGGACCTGAGCCTATAAAAATGCAGCATTTAATAATAATCAATGAACAGCACATTATGATTTCTTAGCAACTTGTTGACAGTTGAATTTGAGTTACAAATCTAACTTTTTAGCTCCTTAGTTTGCTACTTCCAATTGATGAACGTGATCTCAATTCAGCTGTAATAATGGAACTATTCGCTGGGGCTGGCGGTAAAGAAGCTGGTTTATTTGCTCATGATTTAATGAATATGTATCATGCTTTTGCCGTACAACAAAATTGNTCTTTTACTGTTTTACACAAAACTGTAATGTCAAATGAAGAAT]

[+] EMBL CD078535             [AACACGTGTTGACCACTGACAACCAGTTGGATGCAACTGTTGTAATCCTTTGATTGTCCTCTGGATGATGGTGGACATTTGCGACTTTAATTGTATCTTTACAGTTTTATTGTCTTTAGAGCTTAAACTCTTACTCAACATGTTATCGATATTATTCTACGTGTAGTATTTATTTGTATATTCTGAAGATACAGCGATGCTCATGTAGTGGTGGTTGTTTTCTTCCTTAATTTTGTGCTTAAGAAATTTTAAATTTCAATAGGGAATTGAAATGTTTTAAAAATTGTTGGACCTGAGCCTATAAAAATGCAGCATTTAATAATAATCAATGAACAGCACATTATGATTTCTTAGCAACTTGTTGACAGTTGAATTTGAGTTACAAATCTAACTTTTTAGCTCCTTAGTTTGCTACTTCCAATTGATGAACGTGATCTCAATTCAGCTGTAATAATGGAACTATTCGCTGGGGCTGGCGGTAAAGAAGCTGGTTTATTTGCTCATGATTTAATGAATATGTATCATGCTTTTGCCGTACAACAAAATTGNTCTTTTACTGTTTTACACAAAACTGTAATGTCAAATGAAGAAT]




>consensus_1768#0
AACACGTGTTGACCACTGACAACCAGTTGGATGCAACTGTTGTAATCCTTTGATTGTCCT
CTGGATGATGGTGGACATTTGCGACTTTAATTGTATCTTTACAGTTTTATTGTCTTTAGA
GCTTAAACTCTTACTCAACATGTTATCGATATTATTCTACGTGTAGTATTTATTTGTATA
TTCTGAAGATACAGCGATGCTCATGTAGTGGTGGTTGTTTTCTTCCTTAATTTTGTGCTT
AAGAAATTTTAAATTTCAATAGGGAATTGAAATGTTTTAAAAATTGTTGGACCTGAGCCT
ATAAAAATGCAGCATTTAATAATAATCAATGAACAGCACATTATGATTTCTTAGCAACTT
GTTGACAGTTGAATTTGAGTTACAAATCTAACTTTTTAGCTCCTTAGTTTGCTACTTCCA
ATTGATGAACGTGATCTCAATTCAGCTGTAATAATGGAACTATTCGCTGGGGCTGGCGGT
AAAGAAGCTGGTTTATTTGCTCATGATTTAATGAATATGTATCATGCTTTTGCCGTACAA
CAAAATTGNTCTTTTACTGTTTTACACAAAACTGTAATGTCAAATGAAGAAT

consensusID : consensus_1768#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 364
fasta sequence

                              [CCATTATTACAGCTGAATTGAGATCACGTTCATCAATTGGAAGTAGCAATCTAAGGAGCTTTTTTTCCAACGCTTCACGCTGAACATTTCTTTGTTTACGTTCCAACTCAGCAATCGCTTTTAAATCATTGACATCATCCTCAGTATCAGTACCGACAATGTCTGTTACTAATTGGTCTACTTCTTTATCAGCTTCAAGTAATATATCCAATTCTTCAATCACATCTACTATTGGTCTCAAATTCTTCCAACATTCAGATAAAGGAAGAAGGTCACATTCTTTTGCCCCAGATGTCATGAGTTTAGTGACGTTTTCATACTCGGATATTATATTTTTCTTGAAAGCATCAAAATGTTCTCTAAA]

[+] EMBL CD199594             [CCATTATTACAGCTGAATTGAGATCACGTTCATCAATTGGAAGTAGCAATCTAAGGAGCTTTTTTTCCAACGCTTCACGCTGAACATTTCTTTGTTTACGTTCCAACTCAGCAATCGCTTTTAAATCATTGACATCATCCTCAGTATCAGTACCGACAATGTCTGTTACTAATTGGTCTACTTCTTTATCAGCTTCAAGTAATATATCCAATTCTTCAATCACATCTACTATTGGTCTCAAATTCTTCCAACATTCAGATAAAGGAAGAAGGTCACATTCTTTTGCCCCAGATGTCATGAGTTTAGTGACGTTTTCATACTCGGATATTATATTTTTCTTGAAAGCATCAAAATGTTCTCTAAA]




>consensus_1768#1
CCATTATTACAGCTGAATTGAGATCACGTTCATCAATTGGAAGTAGCAATCTAAGGAGCT
TTTTTTCCAACGCTTCACGCTGAACATTTCTTTGTTTACGTTCCAACTCAGCAATCGCTT
TTAAATCATTGACATCATCCTCAGTATCAGTACCGACAATGTCTGTTACTAATTGGTCTA
CTTCTTTATCAGCTTCAAGTAATATATCCAATTCTTCAATCACATCTACTATTGGTCTCA
AATTCTTCCAACATTCAGATAAAGGAAGAAGGTCACATTCTTTTGCCCCAGATGTCATGA
GTTTAGTGACGTTTTCATACTCGGATATTATATTTTTCTTGAAAGCATCAAAATGTTCTC
TAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1768#0      AACACGTGTTGACCACTGACAACCAGTTGGATGCAACTGTTGTAATCCTTTGATTGTCCT 60
consensus_1768#1      ------------------------------------------------------------
                                                                                  

consensus_1768#0      CTGGATGATGGTGGACATTTGCGACTTTAATTGTATCTTTACAGTTTTATTGTCTTTAGA 120
consensus_1768#1      ------------------------------------------------------------
                                                                                  

consensus_1768#0      GCTTAAACTCTTACTCAACATGTTATCGATATTATTCTACGTGTAGTATTTATTTGTATA 180
consensus_1768#1      ------------------------------------------------------------
                                                                                  

consensus_1768#0      TTCTGAAGATACAGCGATGCTCATGTAGTGGTGGTTGTTTTCTTCCTTAATTTTGTGCTT 240
consensus_1768#1      --------------CCATTATTACAGCTGAATTGAGATCACGTTCATCAATTGGAAGT-- 44
                                    * **  * *        * *   *    *** * ****    *   

consensus_1768#0      AAGAAATTTTAAATTTCAATAGGGAATTGAAATGTTTTAAAAATTGTTGGACCTGAGCCT 300
consensus_1768#1      -AGCAATCTAAGGAGCTTTTTTTCCAACGCTTCACGCTGAACATTTCTTTGTTTACGTTC 103
                       ** *** * *        *     *  *        * ** ***  *     *  *   

consensus_1768#0      ATAAAAATGCAGCATTTAATAATAATCAATGAACAGCACATTATGATTTCTTAGCAACT- 359
consensus_1768#1      C----AACTCAGCAATCGCTTTTAAATCATTGACATCA---------TCCTCAGTATCAG 150
                           **  ***** *   *  ***   **  *** **         * ** ** * *  

consensus_1768#0      TGTTGACAGTTGAATTTGAGTTACAAATCTAACTTTTTAGCTCCTTAGTTTGCTACTTCC 419
consensus_1768#1      TACCGACAAT-GTCTGTTACTAATTGGTCTACTTCTTTATCAGCTTCAAGTAATATATCC 209
                      *   **** * *  * * * * *    ****  * **** *  ***    *  **  ***

consensus_1768#0      AATTGATGAACGTGATCT-CAATTCAGCTGTAATAATGGAACTATTCGCTGGGGCTGGCG 478
consensus_1768#1      AATTCTTCAATCACATCTACTATTGGTCTCAAATTCTTCCAACATTCA-----GATAAAG 264
                      ****  * **    **** * ***   **  ***  *   *  ****      * *   *

consensus_1768#0      GTAAAGAAGCTGGTTTATTTGCTCATGATTTAATGAATATGTATCATGCTTTTGCCGTAC 538
consensus_1768#1      GAAGAAGGTCACATTCTTTTGCCCCAGATGTCATGAGTTTA-GTGACGTTTT---CATAC 320
                      * * *    *   **  ***** *  *** * **** * *   * * * ***   * ***

consensus_1768#0      AACAAAATTGNTCTTTTACTGTTTTACACAAAACTGTAATGTCAAATGAAGAAT 592
consensus_1768#1      TCGGATATTATATTTTTCTTGAAA-GCATCAAAATGTTCTCTAAA--------- 364
                          * ***    ****  **     **  *** ***  * * **