cluster # 178

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Schistosoma mansoni
cluster # 178 cluster # 178 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_178#0 length = 338 sequences # 1

consensus_178#1 length = 228 sequences # 1

consensusID : consensus_178#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 338
fasta sequence

                              [AAAGCCTTCTGTGATAGCCTGTACGATTTTGATTATGACCAACTGAGTATAAACAATTTTCTGTGTATTTCCCTATTTTATTTGTTTGCACAAAATACCCTACTACTACAAGTTGGAAGTTCAGTTCTTGCACATTCATAAAGCACATTTTTACAATCCACCGTACCAACATGTTAAAATACATCCAATAAACAGAAATAAAATTAATATAATCACGCGTAAATCATATATCGTTTCATTTTTATCCTGGACCCTTCAAGTTATCTTTCAAAAACCACCCAAAAAAGGCTCCATCCTAACCGGTATTAATCCGATCTTGGTGGTCAATTATAATTTTC]

[+] EMBL AW146541             [AAAGCCTTCTGTGATAGCCTGTACGATTTTGATTATGACCAACTGAGTATAAACAATTTTCTGTGTATTTCCCTATTTTATTTGTTTGCACAAAATACCCTACTACTACAAGTTGGAAGTTCAGTTCTTGCACATTCATAAAGCACATTTTTACAATCCACCGTACCAACATGTTAAAATACATCCAATAAACAGAAATAAAATTAATATAATCACGCGTAAATCATATATCGTTTCATTTTTATCCTGGACCCTTCAAGTTATCTTTCAAAAACCACCCAAAAAAGGCTCCATCCTAACCGGTATTAATCCGATCTTGGTGGTCAATTATAATTTTC]




>consensus_178#0
AAAGCCTTCTGTGATAGCCTGTACGATTTTGATTATGACCAACTGAGTATAAACAATTTT
CTGTGTATTTCCCTATTTTATTTGTTTGCACAAAATACCCTACTACTACAAGTTGGAAGT
TCAGTTCTTGCACATTCATAAAGCACATTTTTACAATCCACCGTACCAACATGTTAAAAT
ACATCCAATAAACAGAAATAAAATTAATATAATCACGCGTAAATCATATATCGTTTCATT
TTTATCCTGGACCCTTCAAGTTATCTTTCAAAAACCACCCAAAAAAGGCTCCATCCTAAC
CGGTATTAATCCGATCTTGGTGGTCAATTATAATTTTC

consensusID : consensus_178#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 228
fasta sequence

                              [CCACCGTACCAACATGTTAAAATACATCCAATAAACAGAAATAAAATTAATATAATCACGCGTAAATCATATATCGTTTCATTTTTATCTTGAACCCTTCAAGTTATCTTTCAAAAACAACACAAAAAAGCATCAATCATAACCGGATATTAATCCGAAATCTTGTTTGTTCATTTATAATTTTTCTCTTTAAATGTACCATTTATCTTCGTAGATTTGCCGCCCATT]

[-] EMBL CD181765             [CCACCGTACCAACATGTTAAAATACATCCAATAAACAGAAATAAAATTAATATAATCACGCGTAAATCATATATCGTTTCATTTTTATCTTGAACCCTTCAAGTTATCTTTCAAAAACAACACAAAAAAGCATCAATCATAACCGGATATTAATCCGAAATCTTGTTTGTTCATTTATAATTTTTCTCTTTAAATGTACCATTTATCTTCGTAGATTTGCCGCCCATT]




>consensus_178#1
CCACCGTACCAACATGTTAAAATACATCCAATAAACAGAAATAAAATTAATATAATCACG
CGTAAATCATATATCGTTTCATTTTTATCTTGAACCCTTCAAGTTATCTTTCAAAAACAA
CACAAAAAAGCATCAATCATAACCGGATATTAATCCGAAATCTTGTTTGTTCATTTATAA
TTTTTCTCTTTAAATGTACCATTTATCTTCGTAGATTTGCCGCCCATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_178#0      AAAGCCTTCTGTGATAGCCTGTACGATTTTGATTATGACCAACTGAGTATAAACAATTTT 60
consensus_178#1      ------------------------------------------------------------
                                                                                 

consensus_178#0      CTGTGTATTTCCCTATTTTATTTGTTTGCACAAAATACCCTACTACTACAAGTTGGAAGT 120
consensus_178#1      ------------------------------------------------------------
                                                                                 

consensus_178#0      TCAGTTCTTGCACATTCATAAAGCACATTTTTACAATCCACCGTACCAACATGTTAAAAT 180
consensus_178#1      -------------------------------------CCACCGTACCAACATGTTAAAAT 23
                                                          ***********************

consensus_178#0      ACATCCAATAAACAGAAATAAAATTAATATAATCACGCGTAAATCATATATCGTTTCATT 240
consensus_178#1      ACATCCAATAAACAGAAATAAAATTAATATAATCACGCGTAAATCATATATCGTTTCATT 83
                     ************************************************************

consensus_178#0      TTTATCCTGGACCCTTCAAGTTATCTTTCAAAAACCACCCAAAAAAGGCTCCATCCTAAC 300
consensus_178#1      TTTATCTTGAACCCTTCAAGTTATCTTTCAAAAACAACACAAAAAAGCATCAATCATAAC 143
                     ****** ** ************************* ** ********  ** *** ****

consensus_178#0      CGG-TATTAATCCGA--TCTTGGTGGT-CAATTATAATTTTC------------------ 338
consensus_178#1      CGGATATTAATCCGAAATCTTGTTTGTTCATTTATAATTTTTCTCTTTAAATGTACCATT 203
                     *** ***********  ***** * ** ** **********                   

consensus_178#0      -------------------------
consensus_178#1      TATCTTCGTAGATTTGCCGCCCATT 228