cluster # 1782

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Schistosoma mansoni
cluster # 1782 cluster # 1782 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1782#0 length = 296 sequences # 1

consensus_1782#1 length = 171 sequences # 1

consensusID : consensus_1782#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 296
fasta sequence

                              [GCTCAAAGCTTTGAAGATGCAGAGCCGGTGGATTCTGTGGATCGACAGTTGTGAGCTTAGAGTAAAAACCACCGCTATCATAGAAACGATAATACCAGCACAAACAACACCTTGCTTCTAACGTCGCAGTGTTTGATAGCGATTCACAGATTACCGACAAATTATCAATCCCATGTCTGACTGGTCGTAAGTACTGATCGGTTAGTGTCGACATTGTTGTCCAATGTGTCGATCGCAAAAACGTTTTCGACTACGAAACAACGATGGAGGTTTGATTCTCACGAGTAGTATCAGCA]

[+] EMBL CD062497             [GCTCAAAGCTTTGAAGATGCAGAGCCGGTGGATTCTGTGGATCGACAGTTGTGAGCTTAGAGTAAAAACCACCGCTATCATAGAAACGATAATACCAGCACAAACAACACCTTGCTTCTAACGTCGCAGTGTTTGATAGCGATTCACAGATTACCGACAAATTATCAATCCCATGTCTGACTGGTCGTAAGTACTGATCGGTTAGTGTCGACATTGTTGTCCAATGTGTCGATCGCAAAAACGTTTTCGACTACGAAACAACGATGGAGGTTTGATTCTCACGAGTAGTATCAGCA]




>consensus_1782#0
GCTCAAAGCTTTGAAGATGCAGAGCCGGTGGATTCTGTGGATCGACAGTTGTGAGCTTAG
AGTAAAAACCACCGCTATCATAGAAACGATAATACCAGCACAAACAACACCTTGCTTCTA
ACGTCGCAGTGTTTGATAGCGATTCACAGATTACCGACAAATTATCAATCCCATGTCTGA
CTGGTCGTAAGTACTGATCGGTTAGTGTCGACATTGTTGTCCAATGTGTCGATCGCAAAA
ACGTTTTCGACTACGAAACAACGATGGAGGTTTGATTCTCACGAGTAGTATCAGCA

consensusID : consensus_1782#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 171
fasta sequence

                              [TACTTAAAAACCTAGGCATACTTAATCACCAGGATAGCACAGGTTTATTGTTTGAGAAATAATGGTATTTATTTGGCAGCTCAAACCTTTAGAGATGCAGAGCAGCTGTATTCTGTGGATCGACAGTTGTGAGCTTAGAGCAAAAACCACCGCTATCATAGAAACGATAAT]

[+] EMBL CD158724             [TACTTAAAAACCTAGGCATACTTAATCACCAGGATAGCACAGGTTTATTGTTTGAGAAATAATGGTATTTATTTGGCAGCTCAAACCTTTAGAGATGCAGAGCAGCTGTATTCTGTGGATCGACAGTTGTGAGCTTAGAGCAAAAACCACCGCTATCATAGAAACGATAAT]




>consensus_1782#1
TACTTAAAAACCTAGGCATACTTAATCACCAGGATAGCACAGGTTTATTGTTTGAGAAAT
AATGGTATTTATTTGGCAGCTCAAACCTTTAGAGATGCAGAGCAGCTGTATTCTGTGGAT
CGACAGTTGTGAGCTTAGAGCAAAAACCACCGCTATCATAGAAACGATAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1782#0      ------------------------------------------------------------
consensus_1782#1      TACTTAAAAACCTAGGCATACTTAATCACCAGGATAGCACAGGTTTATTGTTTGAGAAAT 60
                                                                                  

consensus_1782#0      ------------------GCTCAAAGCTTTGAAGATGCAGAGCCGGTGGATTCTGTGGAT 42
consensus_1782#1      AATGGTATTTATTTGGCAGCTCAAACCTTTAGAGATGCAGAGCAGCTGTATTCTGTGGAT 120
                                        ******* ****  *********** * ** ***********

consensus_1782#0      CGACAGTTGTGAGCTTAGAGTAAAAACCACCGCTATCATAGAAACGATAATACCAGCACA 102
consensus_1782#1      CGACAGTTGTGAGCTTAGAGCAAAAACCACCGCTATCATAGAAACGATAAT--------- 171
                      ******************** ******************************         

consensus_1782#0      AACAACACCTTGCTTCTAACGTCGCAGTGTTTGATAGCGATTCACAGATTACCGACAAAT 162
consensus_1782#1      ------------------------------------------------------------
                                                                                  

consensus_1782#0      TATCAATCCCATGTCTGACTGGTCGTAAGTACTGATCGGTTAGTGTCGACATTGTTGTCC 222
consensus_1782#1      ------------------------------------------------------------
                                                                                  

consensus_1782#0      AATGTGTCGATCGCAAAAACGTTTTCGACTACGAAACAACGATGGAGGTTTGATTCTCAC 282
consensus_1782#1      ------------------------------------------------------------
                                                                                  

consensus_1782#0      GAGTAGTATCAGCA 296
consensus_1782#1      --------------