cluster # 18

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Schistosoma mansoni
cluster # 18 cluster # 18 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_18#0 length = 603 sequences # 1

consensus_18#1 length = 314 sequences # 1

consensusID : consensus_18#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 603
fasta sequence

                              [TAATGCTGAAGAAGTGTATATTGACATTCCAACAAAGCCGCCAGCAAATCCGAGCCAACCTGCCTGTTTTACACCACAAGCGGCAGCCATATTCAGATTATTGCTATAACGTAATACTTCTTTCCTCTCCCCGGAAAAATTAATTACTGTTCGGATAGCGCTCAAAACTTCCTCAGTAATTGTACTAGACTTTGAGTATGCATCCTGTTCCATGAGAGAGAAGCGTCTCACAGTAGTACCGAATAAAGAAAAACCAATAAGAACTAATGGCAGCGATGAGCAGGCAACCAAACTAAGCTTCCAACCATACGCGAATGCGATAAAGAAGCCAATAAAGAAACTAGAGATATTCTGAATAAATTCGCTTAACTTCTCCCCAATACCAAGATGTATGCTAGTTGTGTGTTCAGTTAATTTATCTATCAGGCTTCCGACGGAGTGCTCATCCAGCCAAGCTACGTCTTGATTCAATACTGCTTGGATTAGAAGTCGTCTGATACGTTTTACAACGCGTGAAGCACAGATGTTTGTGAACCACACTTGACCAAAGGATATCAGAAAAGCACAAGCAGNCATAAACTGCATCCAAACAGATGCACGATA]

[+] EMBL CD136833             [TAATGCTGAAGAAGTGTATATTGACATTCCAACAAAGCCGCCAGCAAATCCGAGCCAACCTGCCTGTTTTACACCACAAGCGGCAGCCATATTCAGATTATTGCTATAACGTAATACTTCTTTCCTCTCCCCGGAAAAATTAATTACTGTTCGGATAGCGCTCAAAACTTCCTCAGTAATTGTACTAGACTTTGAGTATGCATCCTGTTCCATGAGAGAGAAGCGTCTCACAGTAGTACCGAATAAAGAAAAACCAATAAGAACTAATGGCAGCGATGAGCAGGCAACCAAACTAAGCTTCCAACCATACGCGAATGCGATAAAGAAGCCAATAAAGAAACTAGAGATATTCTGAATAAATTCGCTTAACTTCTCCCCAATACCAAGATGTATGCTAGTTGTGTGTTCAGTTAATTTATCTATCAGGCTTCCGACGGAGTGCTCATCCAGCCAAGCTACGTCTTGATTCAATACTGCTTGGATTAGAAGTCGTCTGATACGTTTTACAACGCGTGAAGCACAGATGTTTGTGAACCACACTTGACCAAAGGATATCAGAAAAGCACAAGCAGNCATAAACTGCATCCAAACAGATGCACGATA]




>consensus_18#0
TAATGCTGAAGAAGTGTATATTGACATTCCAACAAAGCCGCCAGCAAATCCGAGCCAACC
TGCCTGTTTTACACCACAAGCGGCAGCCATATTCAGATTATTGCTATAACGTAATACTTC
TTTCCTCTCCCCGGAAAAATTAATTACTGTTCGGATAGCGCTCAAAACTTCCTCAGTAAT
TGTACTAGACTTTGAGTATGCATCCTGTTCCATGAGAGAGAAGCGTCTCACAGTAGTACC
GAATAAAGAAAAACCAATAAGAACTAATGGCAGCGATGAGCAGGCAACCAAACTAAGCTT
CCAACCATACGCGAATGCGATAAAGAAGCCAATAAAGAAACTAGAGATATTCTGAATAAA
TTCGCTTAACTTCTCCCCAATACCAAGATGTATGCTAGTTGTGTGTTCAGTTAATTTATC
TATCAGGCTTCCGACGGAGTGCTCATCCAGCCAAGCTACGTCTTGATTCAATACTGCTTG
GATTAGAAGTCGTCTGATACGTTTTACAACGCGTGAAGCACAGATGTTTGTGAACCACAC
TTGACCAAAGGATATCAGAAAAGCACAAGCAGNCATAAACTGCATCCAAACAGATGCACG
ATA

consensusID : consensus_18#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 314
fasta sequence

                              [CTACATNTGATTCTCTTAATCCAGATATTCAGACATAGGTATGAGTTATTTCAAAATATCTATACCAATAACCACTTTATCTTATATAACGAAACAGATTGTATAATCAGATGTATTCTGAAGTAATATGGGAAAAACCGGTCTTACCAAATCCAAGCCAACCTGCCTGTTTTACACCACAAGCGGCAGCCATATTCAGATTATTGCTATAACGTAATACTTCTTTCCTCTCCCCGGAAAAATTAATTACTGTTCGGATAGCGCTCAAAACTTCCTCAGTAATCGTACTAGACTTTGAGTATGCATCCTGTTCC]

[-] EMBL CD177694             [CTACATNTGATTCTCTTAATCCAGATATTCAGACATAGGTATGAGTTATTTCAAAATATCTATACCAATAACCACTTTATCTTATATAACGAAACAGATTGTATAATCAGATGTATTCTGAAGTAATATGGGAAAAACCGGTCTTACCAAATCCAAGCCAACCTGCCTGTTTTACACCACAAGCGGCAGCCATATTCAGATTATTGCTATAACGTAATACTTCTTTCCTCTCCCCGGAAAAATTAATTACTGTTCGGATAGCGCTCAAAACTTCCTCAGTAATCGTACTAGACTTTGAGTATGCATCCTGTTCC]




>consensus_18#1
CTACATNTGATTCTCTTAATCCAGATATTCAGACATAGGTATGAGTTATTTCAAAATATC
TATACCAATAACCACTTTATCTTATATAACGAAACAGATTGTATAATCAGATGTATTCTG
AAGTAATATGGGAAAAACCGGTCTTACCAAATCCAAGCCAACCTGCCTGTTTTACACCAC
AAGCGGCAGCCATATTCAGATTATTGCTATAACGTAATACTTCTTTCCTCTCCCCGGAAA
AATTAATTACTGTTCGGATAGCGCTCAAAACTTCCTCAGTAATCGTACTAGACTTTGAGT
ATGCATCCTGTTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_18#0      ------------------------------------------------------------
consensus_18#1      CTACATNTGATTCTCTTAATCCAGATATTCAGACATAGGTATGAGTTATTTCAAAATATC 60
                                                                                

consensus_18#0      ------------------------------------TAATGC-TGAAGAAGTGTATATTG 23
consensus_18#1      TATACCAATAACCACTTTATCTTATATAACGAAACAGATTGTATAATCAGATGTATTCTG 120
                                                         * **  * *  *  *****  **

consensus_18#0      ACATTCCA---ACAAAGCCG---CCAGCAAATCCGAGCCAACCTGCCTGTTTTACACCAC 77
consensus_18#1      AAGTAATATGGGAAAAACCGGTCTTACCAAATCCAAGCCAACCTGCCTGTTTTACACCAC 180
                    *  *   *     *** ***     * ******* *************************

consensus_18#0      AAGCGGCAGCCATATTCAGATTATTGCTATAACGTAATACTTCTTTCCTCTCCCCGGAAA 137
consensus_18#1      AAGCGGCAGCCATATTCAGATTATTGCTATAACGTAATACTTCTTTCCTCTCCCCGGAAA 240
                    ************************************************************

consensus_18#0      AATTAATTACTGTTCGGATAGCGCTCAAAACTTCCTCAGTAATTGTACTAGACTTTGAGT 197
consensus_18#1      AATTAATTACTGTTCGGATAGCGCTCAAAACTTCCTCAGTAATCGTACTAGACTTTGAGT 300
                    ******************************************* ****************

consensus_18#0      ATGCATCCTGTTCCATGAGAGAGAAGCGTCTCACAGTAGTACCGAATAAAGAAAAACCAA 257
consensus_18#1      ATGCATCCTGTTCC---------------------------------------------- 314
                    **************                                              

consensus_18#0      TAAGAACTAATGGCAGCGATGAGCAGGCAACCAAACTAAGCTTCCAACCATACGCGAATG 317
consensus_18#1      ------------------------------------------------------------
                                                                                

consensus_18#0      CGATAAAGAAGCCAATAAAGAAACTAGAGATATTCTGAATAAATTCGCTTAACTTCTCCC 377
consensus_18#1      ------------------------------------------------------------
                                                                                

consensus_18#0      CAATACCAAGATGTATGCTAGTTGTGTGTTCAGTTAATTTATCTATCAGGCTTCCGACGG 437
consensus_18#1      ------------------------------------------------------------
                                                                                

consensus_18#0      AGTGCTCATCCAGCCAAGCTACGTCTTGATTCAATACTGCTTGGATTAGAAGTCGTCTGA 497
consensus_18#1      ------------------------------------------------------------
                                                                                

consensus_18#0      TACGTTTTACAACGCGTGAAGCACAGATGTTTGTGAACCACACTTGACCAAAGGATATCA 557
consensus_18#1      ------------------------------------------------------------
                                                                                

consensus_18#0      GAAAAGCACAAGCAGNCATAAACTGCATCCAAACAGATGCACGATA 603
consensus_18#1      ----------------------------------------------