cluster # 1826

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Schistosoma mansoni
cluster # 1826 cluster # 1826 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1826#0 length = 694 sequences # 1

consensus_1826#1 length = 367 sequences # 1

consensusID : consensus_1826#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 694
fasta sequence

                              [CCCCCATATAATGTTCGTGTTGAATAATGGGAGTTCACTTCCCCCATTGAATCTTATAACTATGGCTACTGTAATCGAAGCAAATGGGCCAGTTTACAATGGACCTGGAGCCAGCAAACCTAGCTCCCCATTTGTACTCTGTAATCTTGAGTTATCTCAGCGCGCTGCTGTAGAAAAGGCCAAAAAGTATGCAATGGAACAAAGTATACGTTCGGTGCTTTTACGTCAAACTCAGTCACAGCAGTCCCTTCAACTGAATAATATAAAAAAGAACCAAACTGTTGCACTCCTGAATCGAGTTTATGTTGGTTCAATAGCATATGATGTAAAAGAAGATAGTCTAAAACAGGTGTTTTCACCGTTTGGTCCTATTAAGTCTGTGAATTTAAGTTGGGATCCTTCTACACAAAAACATAAAGGGTTCGCATTTCTTGAATTTGAATATCCCGAAGCTGCACAATTAGCTATTGACCAGATGAACGGTACTAGCTTTGGTGGGAGGCAGTTAAAAGTTGGTAGACCAAGTAACCTAACAAACGCCGAACCTGTCATAAATGAGCTAGTTAATGAACACAATCTTCATAACCGCATTTACGTTGCTGGTATACACTTAGATCTCACTGAAGATGATGTTTCTTTAGTATTTGAAGCTTTTGGGAAAATAGTGTTTTGCAAGCTTCAACCTGATCCAACT]

[+] EMBL BF936422             [CCCCCATATAATGTTCGTGTTGAATAATGGGAGTTCACTTCCCCCATTGAATCTTATAACTATGGCTACTGTAATCGAAGCAAATGGGCCAGTTTACAATGGACCTGGAGCCAGCAAACCTAGCTCCCCATTTGTACTCTGTAATCTTGAGTTATCTCAGCGCGCTGCTGTAGAAAAGGCCAAAAAGTATGCAATGGAACAAAGTATACGTTCGGTGCTTTTACGTCAAACTCAGTCACAGCAGTCCCTTCAACTGAATAATATAAAAAAGAACCAAACTGTTGCACTCCTGAATCGAGTTTATGTTGGTTCAATAGCATATGATGTAAAAGAAGATAGTCTAAAACAGGTGTTTTCACCGTTTGGTCCTATTAAGTCTGTGAATTTAAGTTGGGATCCTTCTACACAAAAACATAAAGGGTTCGCATTTCTTGAATTTGAATATCCCGAAGCTGCACAATTAGCTATTGACCAGATGAACGGTACTAGCTTTGGTGGGAGGCAGTTAAAAGTTGGTAGACCAAGTAACCTAACAAACGCCGAACCTGTCATAAATGAGCTAGTTAATGAACACAATCTTCATAACCGCATTTACGTTGCTGGTATACACTTAGATCTCACTGAAGATGATGTTTCTTTAGTATTTGAAGCTTTTGGGAAAATAGTGTTTTGCAAGCTTCAACCTGATCCAACT]




>consensus_1826#0
CCCCCATATAATGTTCGTGTTGAATAATGGGAGTTCACTTCCCCCATTGAATCTTATAAC
TATGGCTACTGTAATCGAAGCAAATGGGCCAGTTTACAATGGACCTGGAGCCAGCAAACC
TAGCTCCCCATTTGTACTCTGTAATCTTGAGTTATCTCAGCGCGCTGCTGTAGAAAAGGC
CAAAAAGTATGCAATGGAACAAAGTATACGTTCGGTGCTTTTACGTCAAACTCAGTCACA
GCAGTCCCTTCAACTGAATAATATAAAAAAGAACCAAACTGTTGCACTCCTGAATCGAGT
TTATGTTGGTTCAATAGCATATGATGTAAAAGAAGATAGTCTAAAACAGGTGTTTTCACC
GTTTGGTCCTATTAAGTCTGTGAATTTAAGTTGGGATCCTTCTACACAAAAACATAAAGG
GTTCGCATTTCTTGAATTTGAATATCCCGAAGCTGCACAATTAGCTATTGACCAGATGAA
CGGTACTAGCTTTGGTGGGAGGCAGTTAAAAGTTGGTAGACCAAGTAACCTAACAAACGC
CGAACCTGTCATAAATGAGCTAGTTAATGAACACAATCTTCATAACCGCATTTACGTTGC
TGGTATACACTTAGATCTCACTGAAGATGATGTTTCTTTAGTATTTGAAGCTTTTGGGAA
AATAGTGTTTTGCAAGCTTCAACCTGATCCAACT

consensusID : consensus_1826#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 367
fasta sequence

                              [CGNGCCTACCACTTAGTTATATAGGAAATAATAAATCAACTCCGATTTGTTTTCTACAGTTTAAAGGGAATATGAAGTTATTGGTAAAAGTCACTTAATTTTCTGCCTGATCTGCAGCCGATATTCAGTTCTTTTAAAATCTGAAGTCCTACATTTTATTTTCATAATAATGTTTCTATTCATATGATCCCGTGATGCATTTGCAACTCTCGGGAATCGAGTTTATGTTGGTTCAATAGCATATGATGTAAAAGAAGATAGTCTAAAACAGGTGTTTTCACCGTTTGGTCCTATTAAGTCTGTGAATTTAAGTTGGGATCCTTCTACACAAAAACATAAAGGGTTCGCATTTCTTGAATTTGATTCC]

[+] EMBL CD062688             [CGNGCCTACCACTTAGTTATATAGGAAATAATAAATCAACTCCGATTTGTTTTCTACAGTTTAAAGGGAATATGAAGTTATTGGTAAAAGTCACTTAATTTTCTGCCTGATCTGCAGCCGATATTCAGTTCTTTTAAAATCTGAAGTCCTACATTTTATTTTCATAATAATGTTTCTATTCATATGATCCCGTGATGCATTTGCAACTCTCGGGAATCGAGTTTATGTTGGTTCAATAGCATATGATGTAAAAGAAGATAGTCTAAAACAGGTGTTTTCACCGTTTGGTCCTATTAAGTCTGTGAATTTAAGTTGGGATCCTTCTACACAAAAACATAAAGGGTTCGCATTTCTTGAATTTGATTCC]




>consensus_1826#1
CGNGCCTACCACTTAGTTATATAGGAAATAATAAATCAACTCCGATTTGTTTTCTACAGT
TTAAAGGGAATATGAAGTTATTGGTAAAAGTCACTTAATTTTCTGCCTGATCTGCAGCCG
ATATTCAGTTCTTTTAAAATCTGAAGTCCTACATTTTATTTTCATAATAATGTTTCTATT
CATATGATCCCGTGATGCATTTGCAACTCTCGGGAATCGAGTTTATGTTGGTTCAATAGC
ATATGATGTAAAAGAAGATAGTCTAAAACAGGTGTTTTCACCGTTTGGTCCTATTAAGTC
TGTGAATTTAAGTTGGGATCCTTCTACACAAAAACATAAAGGGTTCGCATTTCTTGAATT
TGATTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1826#0      CCCCCATATAATGTTCGTGTTGAATAATGGGAGTTCACTTCCCCCATTGAATCTTATAAC 60
consensus_1826#1      ------------------------------------------------------------
                                                                                  

consensus_1826#0      TATGGCTACTGTAATCGAAGCAAATGGGCCAGTTTACAATGGACCTGGAGCCAGCAAACC 120
consensus_1826#1      --------------------CGNGCCTACCACTTAGTTATATA---GGAAATAATAAATC 37
                                          *       *** **    **  *   ***   *  *** *

consensus_1826#0      TAGCTCCCCATTTGTACTCTGTAATCTTGAGTTATCTCAGCGCGCTGCTGTAGAAAAGGC 180
consensus_1826#1      AA--CTCCGATTTGTTTTCTACAGTTTAAAGGGAATATGAAGTTAT-TGGTAAAAGTCAC 94
                       *    ** ******  ***  * * *  **  *       *   *   *** **    *

consensus_1826#0      CAAAAAGTATGCAATGGAACAAAGTATACGTTCGGTGCTTTTACG--TCAAACTCAGTCA 238
consensus_1826#1      TTAATTTTCTGCC-TGATCTGCAGCCGATATTCAGTTCTTTTAAAATCTGAAGTCCTACA 153
                        **   * ***  **      **   *  *** ** ******       ** **   **

consensus_1826#0      CAGCAGTCCCTTCAACTGAATAATATAAAAAAGAACC----AAACTGTTGCACTCCT--- 291
consensus_1826#1      TTTTATTTTCATAATAATGTTTCTATTCATATGATCCCGTGATGCATTTGCAACTCTCGG 213
                          * *  * * *      *  ***  * * ** **    *  *  *****   **   

consensus_1826#0      GAATCGAGTTTATGTTGGTTCAATAGCATATGATGTAAAAGAAGATAGTCTAAAACAGGT 351
consensus_1826#1      GAATCGAGTTTATGTTGGTTCAATAGCATATGATGTAAAAGAAGATAGTCTAAAACAGGT 273
                      ************************************************************

consensus_1826#0      GTTTTCACCGTTTGGTCCTATTAAGTCTGTGAATTTAAGTTGGGATCCTTCTACACAAAA 411
consensus_1826#1      GTTTTCACCGTTTGGTCCTATTAAGTCTGTGAATTTAAGTTGGGATCCTTCTACACAAAA 333
                      ************************************************************

consensus_1826#0      ACATAAAGGGTTCGCATTTCTTGAATTTGAATATCCCGAAGCTGCACAATTAGCTATTGA 471
consensus_1826#1      ACATAAAGGGTTCGCATTTCTTGAATTTGATTCC-------------------------- 367
                      ****************************** *                            

consensus_1826#0      CCAGATGAACGGTACTAGCTTTGGTGGGAGGCAGTTAAAAGTTGGTAGACCAAGTAACCT 531
consensus_1826#1      ------------------------------------------------------------
                                                                                  

consensus_1826#0      AACAAACGCCGAACCTGTCATAAATGAGCTAGTTAATGAACACAATCTTCATAACCGCAT 591
consensus_1826#1      ------------------------------------------------------------
                                                                                  

consensus_1826#0      TTACGTTGCTGGTATACACTTAGATCTCACTGAAGATGATGTTTCTTTAGTATTTGAAGC 651
consensus_1826#1      ------------------------------------------------------------
                                                                                  

consensus_1826#0      TTTTGGGAAAATAGTGTTTTGCAAGCTTCAACCTGATCCAACT 694
consensus_1826#1      -------------------------------------------