cluster # 1832

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Schistosoma mansoni
cluster # 1832 cluster # 1832 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1832#0 length = 596 sequences # 1

consensus_1832#1 length = 502 sequences # 1

consensusID : consensus_1832#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 596
fasta sequence

                              [GGTTATGTATCTCGATCACATAGTAAACGTTTATTACATAAATATAATTGGGATTTAGATGCAGCTATCTCACGAGCTCATTATGTGTATGAATTTCGAAAGTTAAAACGTCAAGAAAAAAATGAACGAATACTATTTGATGATGAAGATCAATTATCATATTTTAATCGGACTAAAGATTGTAGTAAATATTTAACACCTTATTCATCAACTTCATCAGATTCTTCTTTATCACCTTTACCATGTTCTGTTAATCATCAATCAGTTATTTCACCATGGTATGATGAAGGTCGAAAAAGTAATCTATTTTAATTGAATATTTTAACTCTGTGAGATATAATTTCTGTAGAAAAATGGTATATGTATGTGATACATACTATTGGCTTCTCGATCCTCCTCGATCTAAAACATTACGCGATAATTCTACACTTATGCGTAGAGCAACTGAATGTGTTTGTGTTCCTCCATCTTCACCACTGGACATTTATTCTACAATTGACAGTTATACTACTAATCTTCCCTAGCGAACTATCGGATTCATCACCAGAATCAATATTTGACAATTATTCTATATTANAGGGTTTATATANAGAAAC]

[+] EMBL CD079150             [GGTTATGTATCTCGATCACATAGTAAACGTTTATTACATAAATATAATTGGGATTTAGATGCAGCTATCTCACGAGCTCATTATGTGTATGAATTTCGAAAGTTAAAACGTCAAGAAAAAAATGAACGAATACTATTTGATGATGAAGATCAATTATCATATTTTAATCGGACTAAAGATTGTAGTAAATATTTAACACCTTATTCATCAACTTCATCAGATTCTTCTTTATCACCTTTACCATGTTCTGTTAATCATCAATCAGTTATTTCACCATGGTATGATGAAGGTCGAAAAAGTAATCTATTTTAATTGAATATTTTAACTCTGTGAGATATAATTTCTGTAGAAAAATGGTATATGTATGTGATACATACTATTGGCTTCTCGATCCTCCTCGATCTAAAACATTACGCGATAATTCTACACTTATGCGTAGAGCAACTGAATGTGTTTGTGTTCCTCCATCTTCACCACTGGACATTTATTCTACAATTGACAGTTATACTACTAATCTTCCCTAGCGAACTATCGGATTCATCACCAGAATCAATATTTGACAATTATTCTATATTANAGGGTTTATATANAGAAAC]




>consensus_1832#0
GGTTATGTATCTCGATCACATAGTAAACGTTTATTACATAAATATAATTGGGATTTAGAT
GCAGCTATCTCACGAGCTCATTATGTGTATGAATTTCGAAAGTTAAAACGTCAAGAAAAA
AATGAACGAATACTATTTGATGATGAAGATCAATTATCATATTTTAATCGGACTAAAGAT
TGTAGTAAATATTTAACACCTTATTCATCAACTTCATCAGATTCTTCTTTATCACCTTTA
CCATGTTCTGTTAATCATCAATCAGTTATTTCACCATGGTATGATGAAGGTCGAAAAAGT
AATCTATTTTAATTGAATATTTTAACTCTGTGAGATATAATTTCTGTAGAAAAATGGTAT
ATGTATGTGATACATACTATTGGCTTCTCGATCCTCCTCGATCTAAAACATTACGCGATA
ATTCTACACTTATGCGTAGAGCAACTGAATGTGTTTGTGTTCCTCCATCTTCACCACTGG
ACATTTATTCTACAATTGACAGTTATACTACTAATCTTCCCTAGCGAACTATCGGATTCA
TCACCAGAATCAATATTTGACAATTATTCTATATTANAGGGTTTATATANAGAAAC

consensusID : consensus_1832#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 502
fasta sequence

                              [AAGATAATCTTGTATTCGAGAACTGCTTGGATTGCATCGATGATCAAACGACAAATACAACCACTCTTTCCAGTGATTATACATCTTCTATAGATGACTGTTCCTCTATTTTTTATGATCCTATATTGGCTAAACTTGAAGCAGAATTGCCTGTTCCACCCCCTCCTCCACGTGCTTGCCCACCTTGGCTTAAAGCTGCTCTTGCAAAACAAGAAGCTTTAAGCAAAGAACCAGTGAAAAAAATTGATTTTAAAGATAGATGCTGTGTATCATCCTCGTTGCAATTACCCACATCTCAGTTGTCCCCTCTTCCATCTGACTTGGATCAACATAAAGCTTTAAGCCTTGGAAATAGCCGTTATAATGTTCGCATTTATCCAATTATACAAAATGGAGTAAAAATAAGTGATACACACTATTGGCTTCTCGATCCCCCTCGATCTAAAACGTTACGCGATAATTCTACACTTATGCGTAGAGCAACTGAATGTGTTCATGTTCC]

[+] EMBL CD183547             [AAGATAATCTTGTATTCGAGAACTGCTTGGATTGCATCGATGATCAAACGACAAATACAACCACTCTTTCCAGTGATTATACATCTTCTATAGATGACTGTTCCTCTATTTTTTATGATCCTATATTGGCTAAACTTGAAGCAGAATTGCCTGTTCCACCCCCTCCTCCACGTGCTTGCCCACCTTGGCTTAAAGCTGCTCTTGCAAAACAAGAAGCTTTAAGCAAAGAACCAGTGAAAAAAATTGATTTTAAAGATAGATGCTGTGTATCATCCTCGTTGCAATTACCCACATCTCAGTTGTCCCCTCTTCCATCTGACTTGGATCAACATAAAGCTTTAAGCCTTGGAAATAGCCGTTATAATGTTCGCATTTATCCAATTATACAAAATGGAGTAAAAATAAGTGATACACACTATTGGCTTCTCGATCCCCCTCGATCTAAAACGTTACGCGATAATTCTACACTTATGCGTAGAGCAACTGAATGTGTTCATGTTCC]




>consensus_1832#1
AAGATAATCTTGTATTCGAGAACTGCTTGGATTGCATCGATGATCAAACGACAAATACAA
CCACTCTTTCCAGTGATTATACATCTTCTATAGATGACTGTTCCTCTATTTTTTATGATC
CTATATTGGCTAAACTTGAAGCAGAATTGCCTGTTCCACCCCCTCCTCCACGTGCTTGCC
CACCTTGGCTTAAAGCTGCTCTTGCAAAACAAGAAGCTTTAAGCAAAGAACCAGTGAAAA
AAATTGATTTTAAAGATAGATGCTGTGTATCATCCTCGTTGCAATTACCCACATCTCAGT
TGTCCCCTCTTCCATCTGACTTGGATCAACATAAAGCTTTAAGCCTTGGAAATAGCCGTT
ATAATGTTCGCATTTATCCAATTATACAAAATGGAGTAAAAATAAGTGATACACACTATT
GGCTTCTCGATCCCCCTCGATCTAAAACGTTACGCGATAATTCTACACTTATGCGTAGAG
CAACTGAATGTGTTCATGTTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1832#0      ----------------------------GGTTATGTATCT-CGATCACATAGTAAA---- 27
consensus_1832#1      AAGATAATCTTGTATTCGAGAACTGCTTGGAT-TGCATCGATGATCAAACGACAAATACA 59
                                                  ** * ** ***   ***** *    ***    

consensus_1832#0      --CGTTTATTACA-TAAATATAATTGGGATTTAGATGCAGCTATCTCACGAGCTCATTAT 84
consensus_1832#1      ACCACTCTTTCCAGTGATTATACATCTTCTATAGATG--ACTGTTCCTCTA-TTTTTTAT 116
                        *  *  ** ** * * ****  *    * ******   ** *  * * *  *  ****

consensus_1832#0      GTGTATGAATTT-CGAAAGTTAAAACGTCAAGAAAAAAATGAACGAATACT--ATTTGAT 141
consensus_1832#1      GATCCTATATTGGCTAAACTTGAAGCAGAATTGCCTGTTCCACCCCCTCCTCCACGTGCT 176
                      *    *  ***  * *** ** ** *   *           * *   * **  *  ** *

consensus_1832#0      GATGAAGATCAATTATCA--TATTTTAATCGGACTAAAGATTGTA-GTAAATATTTAACA 198
consensus_1832#1      TGCCCACCTTGGCTTAAAGCTGCTCTTGCAAAACAAGAAGCTTTAAGCAAAGAACCAGTG 236
                           *  *    *   *  *  * *      ** * *   * ** * *** *   *   

consensus_1832#0      CCTTATTCATCAACTTCATCAGATTCTTCTTTATCACCTTTACCATGTTCTGTTAATCAT 258
consensus_1832#1      AAAAAA--ATTGATTTTAA-AGATAGATGCTGTGTATCATCCTCGT-TGCAATTACCCAC 292
                          *   **  * ** *  ****   *  *    * * *   * * * *  ***  ** 

consensus_1832#0      CAATCAGTTATTTCACCATG-GTATGATGAAGGTCGAAAAAGTAATCTA----TTTTAAT 313
consensus_1832#1      ATCTCAGTTGTCCCCTCTTCCATCTGACTTGGATCAACATAAAGCTTTAAGCCTTGGAAA 352
                         ****** *  *  * *   * ***    * ** * * *    * **    **  ** 

consensus_1832#0      TGAATATTTTAACTCTGTGAGATATA-ATTTCTGTAGAAAAATGGTATATGTATGTGATA 372
consensus_1832#1      TAGCCGTTATAATGTTCGCATTTATCCAATTATACA-AAATGGAGTAAAAATAAGTGATA 411
                      *     ** ***   *   *  ***  * ** *  * ***    *** *  ** ******

consensus_1832#0      CATACTATTGGCTTCTCGATCCTCCTCGATCTAAAACATTACGCGATAATTCTACACTTA 432
consensus_1832#1      CACACTATTGGCTTCTCGATCCCCCTCGATCTAAAACGTTACGCGATAATTCTACACTTA 471
                      ** ******************* ************** **********************

consensus_1832#0      TGCGTAGAGCAACTGAATGTGTTTGTGTTCCTCCATCTTCACCACTGGACATTTATTCTA 492
consensus_1832#1      TGCGTAGAGCAACTGAATGTGTTCATGTTCC----------------------------- 502
                      ***********************  ******                             

consensus_1832#0      CAATTGACAGTTATACTACTAATCTTCCCTAGCGAACTATCGGATTCATCACCAGAATCA 552
consensus_1832#1      ------------------------------------------------------------
                                                                                  

consensus_1832#0      ATATTTGACAATTATTCTATATTANAGGGTTTATATANAGAAAC 596
consensus_1832#1      --------------------------------------------