cluster # 1843

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Schistosoma mansoni
cluster # 1843 cluster # 1843 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1843#0 length = 637 sequences # 1

consensus_1843#1 length = 442 sequences # 1

consensusID : consensus_1843#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 637
fasta sequence

                              [ATTACTTTAGTTCAAGTCTTATATTATTGACTAGTTTGTTAATTCTACTCGGCACTGTTAGTTCAAGTGTGAAATGGATCATTTTAAAAATTATTGTCAAAATACTTTTGTTAGATCGCTTCCTATTGCGTAGACTACATCAAACTGGTAATAAATGGATGCATTCACTGGATATATCTGACTGGCTGTACAAACCTGAACATGTCGCAGCGTTATGGACTTGATTACTGATTTGGTGGATTATATTTCTAGTATTTCGTTTCAAAGCAATTATTCATCTACATCCTAATGGTTCATTATGGGAAAAATGCCAATATTATGCCCCAGTGATCACTGGCGCTTTCATAGTTTACAACCAATTATTATATAAGATAGCATTGATCAGATTACGAACATGAAGATGCTATACAATCAGCTCGAATTGTTTACTTTTTGTGCATAGTAGATGCATTTTGTTTGTATAAATCAAGAAGTATACGTTTAAATAAAATTGCTAATCGTTTATTTGGTCAAACATCAGCGAATTCATCAAAAACATTNTGGGATTCAATTATTCATCCATTATCTACATTANATATACTCATGTGTTTACTTGGTAAACCTGTGATTACAATTTTATGGCTTAGTATATGGATTA]

[+] EMBL CD079210             [ATTACTTTAGTTCAAGTCTTATATTATTGACTAGTTTGTTAATTCTACTCGGCACTGTTAGTTCAAGTGTGAAATGGATCATTTTAAAAATTATTGTCAAAATACTTTTGTTAGATCGCTTCCTATTGCGTAGACTACATCAAACTGGTAATAAATGGATGCATTCACTGGATATATCTGACTGGCTGTACAAACCTGAACATGTCGCAGCGTTATGGACTTGATTACTGATTTGGTGGATTATATTTCTAGTATTTCGTTTCAAAGCAATTATTCATCTACATCCTAATGGTTCATTATGGGAAAAATGCCAATATTATGCCCCAGTGATCACTGGCGCTTTCATAGTTTACAACCAATTATTATATAAGATAGCATTGATCAGATTACGAACATGAAGATGCTATACAATCAGCTCGAATTGTTTACTTTTTGTGCATAGTAGATGCATTTTGTTTGTATAAATCAAGAAGTATACGTTTAAATAAAATTGCTAATCGTTTATTTGGTCAAACATCAGCGAATTCATCAAAAACATTNTGGGATTCAATTATTCATCCATTATCTACATTANATATACTCATGTGTTTACTTGGTAAACCTGTGATTACAATTTTATGGCTTAGTATATGGATTA]




>consensus_1843#0
ATTACTTTAGTTCAAGTCTTATATTATTGACTAGTTTGTTAATTCTACTCGGCACTGTTA
GTTCAAGTGTGAAATGGATCATTTTAAAAATTATTGTCAAAATACTTTTGTTAGATCGCT
TCCTATTGCGTAGACTACATCAAACTGGTAATAAATGGATGCATTCACTGGATATATCTG
ACTGGCTGTACAAACCTGAACATGTCGCAGCGTTATGGACTTGATTACTGATTTGGTGGA
TTATATTTCTAGTATTTCGTTTCAAAGCAATTATTCATCTACATCCTAATGGTTCATTAT
GGGAAAAATGCCAATATTATGCCCCAGTGATCACTGGCGCTTTCATAGTTTACAACCAAT
TATTATATAAGATAGCATTGATCAGATTACGAACATGAAGATGCTATACAATCAGCTCGA
ATTGTTTACTTTTTGTGCATAGTAGATGCATTTTGTTTGTATAAATCAAGAAGTATACGT
TTAAATAAAATTGCTAATCGTTTATTTGGTCAAACATCAGCGAATTCATCAAAAACATTN
TGGGATTCAATTATTCATCCATTATCTACATTANATATACTCATGTGTTTACTTGGTAAA
CCTGTGATTACAATTTTATGGCTTAGTATATGGATTA

consensusID : consensus_1843#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 442
fasta sequence

                              [GGCAGATCGGCACGAGACGTCCTAATGGTTCATTATGGGAAAATGTCAATATTATGCCCCAGTGATCACTGGCGCTTTCATAGTTTACAACCAATTATTATATAGGATAGCAGTATCAGATTACGAACATGAAGATGCTATACAATCAGCTCGAATTGTTTACTTTTTGTGCATAGTAGATGCATTTTGTTTGTATAAATCAAGAAGTATACGTTTAAATAAAATTGCTAATCGTTTATTTGGTCAAACATCAGCGAATTCATCAAACATTTTGGGATTCAATTATTCATCCATTATCTACATTAAATATACTCATGTGTTTACTTGGTAAACCTGTGATTACAATTTTATGGCTTAGTATATGGATTAAAGAAGCGTTAATATCCGAAATGATACAATTAATATTTCATTATTCGGGTATTCATTCATCGCATAATACATT]

[+] EMBL CD084093             [GGCAGATCGGCACGAGACGTCCTAATGGTTCATTATGGGAAAATGTCAATATTATGCCCCAGTGATCACTGGCGCTTTCATAGTTTACAACCAATTATTATATAGGATAGCAGTATCAGATTACGAACATGAAGATGCTATACAATCAGCTCGAATTGTTTACTTTTTGTGCATAGTAGATGCATTTTGTTTGTATAAATCAAGAAGTATACGTTTAAATAAAATTGCTAATCGTTTATTTGGTCAAACATCAGCGAATTCATCAAACATTTTGGGATTCAATTATTCATCCATTATCTACATTAAATATACTCATGTGTTTACTTGGTAAACCTGTGATTACAATTTTATGGCTTAGTATATGGATTAAAGAAGCGTTAATATCCGAAATGATACAATTAATATTTCATTATTCGGGTATTCATTCATCGCATAATACATT]




>consensus_1843#1
GGCAGATCGGCACGAGACGTCCTAATGGTTCATTATGGGAAAATGTCAATATTATGCCCC
AGTGATCACTGGCGCTTTCATAGTTTACAACCAATTATTATATAGGATAGCAGTATCAGA
TTACGAACATGAAGATGCTATACAATCAGCTCGAATTGTTTACTTTTTGTGCATAGTAGA
TGCATTTTGTTTGTATAAATCAAGAAGTATACGTTTAAATAAAATTGCTAATCGTTTATT
TGGTCAAACATCAGCGAATTCATCAAACATTTTGGGATTCAATTATTCATCCATTATCTA
CATTAAATATACTCATGTGTTTACTTGGTAAACCTGTGATTACAATTTTATGGCTTAGTA
TATGGATTAAAGAAGCGTTAATATCCGAAATGATACAATTAATATTTCATTATTCGGGTA
TTCATTCATCGCATAATACATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1843#0      ATTACTTTAGTTCAAGTCTTATATTATTGACTAGTTTGTTAATTCTACTCGGCACTGTTA 60
consensus_1843#1      ------------------------------------------------------------
                                                                                  

consensus_1843#0      GTTCAAGTGTGAAATGGATCATTTTAAAAATTATTGTCAAAATACTTTTGTTAGATCGCT 120
consensus_1843#1      ------------------------------------------------------------
                                                                                  

consensus_1843#0      TCCTATTGCGTAGACTACATCAAACTGGTAATAAATGGATGCATTCACTGGATATATCTG 180
consensus_1843#1      ------------------------------------------------------------
                                                                                  

consensus_1843#0      ACTGGCTGTACAAACCTGAACATGTCGCAGCGTTATGGACTTGATTACTGATTTGGTGGA 240
consensus_1843#1      ------------------------------------------------------------
                                                                                  

consensus_1843#0      TTATATTTCTAGTATTTCGTTTCAAAGCAATTATTCATCT-ACATCCTAATGGTTCATTA 299
consensus_1843#1      -------------------------GGCAGATCGGCACGAGACGTCCTAATGGTTCATTA 35
                                                ***  *   **    ** ****************

consensus_1843#0      TGGGAAAAATGCCAATATTATGCCCCAGTGATCACTGGCGCTTTCATAGTTTACAACCAA 359
consensus_1843#1      TGGGAAAA-TGTCAATATTATGCCCCAGTGATCACTGGCGCTTTCATAGTTTACAACCAA 94
                      ******** ** ************************************************

consensus_1843#0      TTATTATATAAGATAGCATTGATCAGATTACGAACATGAAGATGCTATACAATCAGCTCG 419
consensus_1843#1      TTATTATATAGGATAGCAGT-ATCAGATTACGAACATGAAGATGCTATACAATCAGCTCG 153
                      ********** ******* * ***************************************

consensus_1843#0      AATTGTTTACTTTTTGTGCATAGTAGATGCATTTTGTTTGTATAAATCAAGAAGTATACG 479
consensus_1843#1      AATTGTTTACTTTTTGTGCATAGTAGATGCATTTTGTTTGTATAAATCAAGAAGTATACG 213
                      ************************************************************

consensus_1843#0      TTTAAATAAAATTGCTAATCGTTTATTTGGTCAAACATCAGCGAATTCATCAAAAACATT 539
consensus_1843#1      TTTAAATAAAATTGCTAATCGTTTATTTGGTCAAACATCAGCGAATTCATCAA--ACATT 271
                      *****************************************************  *****

consensus_1843#0      NTGGGATTCAATTATTCATCCATTATCTACATTANATATACTCATGTGTTTACTTGGTAA 599
consensus_1843#1      TTGGGATTCAATTATTCATCCATTATCTACATTAAATATACTCATGTGTTTACTTGGTAA 331
                       ********************************* *************************

consensus_1843#0      ACCTGTGATTACAATTTTATGGCTTAGTATATGGATTA---------------------- 637
consensus_1843#1      ACCTGTGATTACAATTTTATGGCTTAGTATATGGATTAAAGAAGCGTTAATATCCGAAAT 391
                      **************************************                      

consensus_1843#0      ---------------------------------------------------
consensus_1843#1      GATACAATTAATATTTCATTATTCGGGTATTCATTCATCGCATAATACATT 442