cluster # 1886

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Schistosoma mansoni
cluster # 1886 cluster # 1886 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1886#0 length = 258 sequences # 1

consensus_1886#1 length = 132 sequences # 1

consensusID : consensus_1886#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 258
fasta sequence

                              [CCTGCTTCCCTCTGAAATATCAGGGCTTGTTCTCGGATTTTTGCGAGATAGCAATTGCGTTGTCGCTGCTGGTGCTTTCCTTCGAGAAAATATCCACTTATCTGAGTTTCGTCATCACTATGCATCAGTGAATGAGATACCTTTATATTTCAGAGAACTAACTTTACTGGATATTGTCCATGATTACATTCATATTGTGAATGAAGGTTCAAATTCAACCAGTGGGTTAGGTGCTGGTACTGTGTGTTCACTAGACAA]

[+] EMBL CD169932             [CCTGCTTCCCTCTGAAATATCAGGGCTTGTTCTCGGATTTTTGCGAGATAGCAATTGCGTTGTCGCTGCTGGTGCTTTCCTTCGAGAAAATATCCACTTATCTGAGTTTCGTCATCACTATGCATCAGTGAATGAGATACCTTTATATTTCAGAGAACTAACTTTACTGGATATTGTCCATGATTACATTCATATTGTGAATGAAGGTTCAAATTCAACCAGTGGGTTAGGTGCTGGTACTGTGTGTTCACTAGACAA]




>consensus_1886#0
CCTGCTTCCCTCTGAAATATCAGGGCTTGTTCTCGGATTTTTGCGAGATAGCAATTGCGT
TGTCGCTGCTGGTGCTTTCCTTCGAGAAAATATCCACTTATCTGAGTTTCGTCATCACTA
TGCATCAGTGAATGAGATACCTTTATATTTCAGAGAACTAACTTTACTGGATATTGTCCA
TGATTACATTCATATTGTGAATGAAGGTTCAAATTCAACCAGTGGGTTAGGTGCTGGTAC
TGTGTGTTCACTAGACAA

consensusID : consensus_1886#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 132
fasta sequence

                              [ATATATTCGTAACACTGGTCGATTGGCTCTTAAACCAGATGACTTATTGTCTAGTGAACACACAGTACCAGCACCTAACCCACTGGTTGAATTTGAACTTATCATATTAGGTAATGAAGCCATAGTTACATT]

[+] EMBL CD164851             [ATATATTCGTAACACTGGTCGATTGGCTCTTAAACCAGATGACTTATTGTCTAGTGAACACACAGTACCAGCACCTAACCCACTGGTTGAATTTGAACTTATCATATTAGGTAATGAAGCCATAGTTACATT]




>consensus_1886#1
ATATATTCGTAACACTGGTCGATTGGCTCTTAAACCAGATGACTTATTGTCTAGTGAACA
CACAGTACCAGCACCTAACCCACTGGTTGAATTTGAACTTATCATATTAGGTAATGAAGC
CATAGTTACATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1886#0      CCTGCTTCCCTCTGAAATATCAGGGCTTGTTCTCGGATTTTTGCGAGATAGCAATTGCGT 60
consensus_1886#1      ------------------------------------------------------ATATAT 6
                                                                             *   *

consensus_1886#0      TGTCGCTGCTGGTGCTTTCCTTCGAGAAAATATCCACTTATCTGAGTTTCGTCATCACTA 120
consensus_1886#1      TCGTAACACTGGTCGATTGGCTCTTAAACCAGATGACTTATT---GTCTAGTGAACACAC 63
                      *       *****   **   **   **       ******    ** * ** * ***  

consensus_1886#0      TGCATCAGTGAATGAGATACCTTTATATTTCAGAGAACTAACTTTACTGGATATTGT--C 178
consensus_1886#1      AGTACCAGCACCTAACCCACTGGTTGAATTT---GAACTTATCATATTAGGTAATGAAGC 120
                       * * ***    * *   **   *  * **    ***** *   ** * * ** **   *

consensus_1886#0      CATGATTACATTCATATTGTGAATGAAGGTTCAAATTCAACCAGTGGGTTAGGTGCTGGT 238
consensus_1886#1      CATAGTTACATT------------------------------------------------ 132
                      ***  *******                                                

consensus_1886#0      ACTGTGTGTTCACTAGACAA 258
consensus_1886#1      --------------------