cluster # 1909

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Schistosoma mansoni
cluster # 1909 cluster # 1909 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1909#0 length = 465 sequences # 1

consensus_1909#1 length = 209 sequences # 1

consensusID : consensus_1909#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 465
fasta sequence

                              [TAGTTGGTAAAGTTCTTACATCCGAAGTCCCTAAATTATTCAGCGAGTGGCCAGAAAATATTTCATTTGTTCAAGAATATAATGAAATATTTAATCACCGTAATCAGGACACATATCCTCATGTATTCAGATATACGTTGTGTCAATGTCTGATTGACCCACAACATAGAGATAATTATCTTACTAATATTCCTTTACCAAGTGATAAGTTTAAAGGTGTTACATGGCAAGAATGCCGTACGTGTCTAGATATTTTGCGGAAAGGTCAGTGGACTTTACTGGGGCGTTGTGACTCATCTGTCATAGAAAAATATCGTTCTGCTTGTAATGAATATTTTCCAATGGCAAATGCATTTCTAACAACCTCACAAATAGATATATTACGTCAGAATATGATTGAAGCAGCTAATTCATCAGCTATATCTGGCGTGTTCCTTATGCCGAATGACACAGATCAACTATTGG]

[+] EMBL CD063028             [TAGTTGGTAAAGTTCTTACATCCGAAGTCCCTAAATTATTCAGCGAGTGGCCAGAAAATATTTCATTTGTTCAAGAATATAATGAAATATTTAATCACCGTAATCAGGACACATATCCTCATGTATTCAGATATACGTTGTGTCAATGTCTGATTGACCCACAACATAGAGATAATTATCTTACTAATATTCCTTTACCAAGTGATAAGTTTAAAGGTGTTACATGGCAAGAATGCCGTACGTGTCTAGATATTTTGCGGAAAGGTCAGTGGACTTTACTGGGGCGTTGTGACTCATCTGTCATAGAAAAATATCGTTCTGCTTGTAATGAATATTTTCCAATGGCAAATGCATTTCTAACAACCTCACAAATAGATATATTACGTCAGAATATGATTGAAGCAGCTAATTCATCAGCTATATCTGGCGTGTTCCTTATGCCGAATGACACAGATCAACTATTGG]




>consensus_1909#0
TAGTTGGTAAAGTTCTTACATCCGAAGTCCCTAAATTATTCAGCGAGTGGCCAGAAAATA
TTTCATTTGTTCAAGAATATAATGAAATATTTAATCACCGTAATCAGGACACATATCCTC
ATGTATTCAGATATACGTTGTGTCAATGTCTGATTGACCCACAACATAGAGATAATTATC
TTACTAATATTCCTTTACCAAGTGATAAGTTTAAAGGTGTTACATGGCAAGAATGCCGTA
CGTGTCTAGATATTTTGCGGAAAGGTCAGTGGACTTTACTGGGGCGTTGTGACTCATCTG
TCATAGAAAAATATCGTTCTGCTTGTAATGAATATTTTCCAATGGCAAATGCATTTCTAA
CAACCTCACAAATAGATATATTACGTCAGAATATGATTGAAGCAGCTAATTCATCAGCTA
TATCTGGCGTGTTCCTTATGCCGAATGACACAGATCAACTATTGG

consensusID : consensus_1909#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 209
fasta sequence

                              [TCGGCACGAGGCGAGTGGCCAGAAAATATTTCATTTGTTCAAGAATATAATGAAATATTTAATCACCGTAATCAGGACACATATCCTCATGTATTCAGATATACGTTGTGTCAATGTCTGATTGACCCACAACATAGAGATAATTATCTTACTAATATTCCTTTACCAAGTGATAAGTTTAAAGGTGTTACATGGCAAGAATGCCGTAC]

[+] EMBL CD078110             [TCGGCACGAGGCGAGTGGCCAGAAAATATTTCATTTGTTCAAGAATATAATGAAATATTTAATCACCGTAATCAGGACACATATCCTCATGTATTCAGATATACGTTGTGTCAATGTCTGATTGACCCACAACATAGAGATAATTATCTTACTAATATTCCTTTACCAAGTGATAAGTTTAAAGGTGTTACATGGCAAGAATGCCGTAC]




>consensus_1909#1
TCGGCACGAGGCGAGTGGCCAGAAAATATTTCATTTGTTCAAGAATATAATGAAATATTT
AATCACCGTAATCAGGACACATATCCTCATGTATTCAGATATACGTTGTGTCAATGTCTG
ATTGACCCACAACATAGAGATAATTATCTTACTAATATTCCTTTACCAAGTGATAAGTTT
AAAGGTGTTACATGGCAAGAATGCCGTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1909#0      TAGTTGGTAAAGTTCTTACATCCGAAGTCCCTAAATTATTCAGCGAGTGGCCAGAAAATA 60
consensus_1909#1      --------------------------------TCGGCACGAGGCGAGTGGCCAGAAAATA 28
                                                           *    ******************

consensus_1909#0      TTTCATTTGTTCAAGAATATAATGAAATATTTAATCACCGTAATCAGGACACATATCCTC 120
consensus_1909#1      TTTCATTTGTTCAAGAATATAATGAAATATTTAATCACCGTAATCAGGACACATATCCTC 88
                      ************************************************************

consensus_1909#0      ATGTATTCAGATATACGTTGTGTCAATGTCTGATTGACCCACAACATAGAGATAATTATC 180
consensus_1909#1      ATGTATTCAGATATACGTTGTGTCAATGTCTGATTGACCCACAACATAGAGATAATTATC 148
                      ************************************************************

consensus_1909#0      TTACTAATATTCCTTTACCAAGTGATAAGTTTAAAGGTGTTACATGGCAAGAATGCCGTA 240
consensus_1909#1      TTACTAATATTCCTTTACCAAGTGATAAGTTTAAAGGTGTTACATGGCAAGAATGCCGTA 208
                      ************************************************************

consensus_1909#0      CGTGTCTAGATATTTTGCGGAAAGGTCAGTGGACTTTACTGGGGCGTTGTGACTCATCTG 300
consensus_1909#1      C----------------------------------------------------------- 209
                      *                                                           

consensus_1909#0      TCATAGAAAAATATCGTTCTGCTTGTAATGAATATTTTCCAATGGCAAATGCATTTCTAA 360
consensus_1909#1      ------------------------------------------------------------
                                                                                  

consensus_1909#0      CAACCTCACAAATAGATATATTACGTCAGAATATGATTGAAGCAGCTAATTCATCAGCTA 420
consensus_1909#1      ------------------------------------------------------------
                                                                                  

consensus_1909#0      TATCTGGCGTGTTCCTTATGCCGAATGACACAGATCAACTATTGG 465
consensus_1909#1      ---------------------------------------------