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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1945#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 706 fasta sequence
[ATAAAATTGAAATTTACAAGTTTATATTCTTTCTGAACCCCTAATATATTTATGATACTTCTTGAGTGATTATTTAATGTCACCGGTGATGCGAAGTATTTTCATTATTTCTGTACACATAACTGAACTCTGATAATCACGGTTTTTCTTTAGAATATTTTGTTACACTTTTAATATTTGTAAAATCAATAGATTGGTTCAATTCAGTGACAAATAATTGTCTTTCTGTTTGTTTCTTAAGTTTTCTTTGTTGGATTTCTTTTTCAGCAGAGAACACCAGAATGGGGACTCACATACACTGGAGAATGTGATTTATTTTCAGTCACTGTAACTAAATATTATTTCTGTAAAAATGGATTTGTTTGTTTGTTTTTATTGGGCAAGCCAGTAGCTATCAGGACTCATTCACAAGGTGGGTAACTCATTGGTCGTTTCAGGCTAAAAGTACTGGGGTCGAGTTCAAGAGTAGACGTCAACACTAAAACGGTACAGTTACATCCAGCTGACGGGTCCCAAATTGAATGAAACGAACATACTGGATTCTACTGCTGACTTTTATTCAACTGTGTGTTTATTTACTTGTTTTCGTCTTGTTTTCGGTTTACAAGTTTATGAATGATAATTATTTTGTCGTATGAAAAGAATTCTGTCATTTTTAAATGAATTTTTCTGGTACTTTNTAAATGTAATTTAAAATATACTGTTT]
[+] EMBL CD080239 [ATAAAATTGAAATTTACAAGTTTATATTCTTTCTGAACCCCTAATATATTTATGATACTTCTTGAGTGATTATTTAATGTCACCGGTGATGCGAAGTATTTTCATTATTTCTGTACACATAACTGAACTCTGATAATCACGGTTTTTCTTTAGAATATTTTGTTACACTTTTAATATTTGTAAAATCAATAGATTGGTTCAATTCAGTGACAAATAATTGTCTTTCTGTTTGTTTCTTAAGTTTTCTTTGTTGGATTTCTTTTTCAGCAGAGAACACCAGAATGGGGACTCACATACACTGGAGAATGTGATTTATTTTCAGTCACTGTAACTAAATATTATTTCTGTAAAAATGGATTTGTTTGTTTGTTTTTATTGGGCAAGCCAGTAGCTATCAGGACTCATTCACAAGGTGGGTAACTCATTGGTCGTTTCAGGCTAAAAGTACTGGGGTCGAGTTCAAGAGTAGACGTCAACACTAAAACGGTACAGTTACATCCAGCTGACGGGTCCCAAATTGAATGAAACGAACATACTGGATTCTACTGCTGACTTTTATTCAACTGTGTGTTTATTTACTTGTTTTCGTCTTGTTTTCGGTTTACAAGTTTATGAATGATAATTATTTTGTCGTATGAAAAGAATTCTGTCATTTTTAAATGAATTTTTCTGGTACTTTNTAAATGTAATTTAAAATATACTGTTT]
consensusID : consensus_1945#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence
[TCTGNGCACGAGGNATTCTTCCCCCCATTTTCTCACAAAATTAATATATACATAGTATTCAATGTTTATCAGTTTCATTCTCTTTCGTTTAAAATTCATGTGCTCACCAGTGGCTGGCTTCAAGACGATTTCATGAAGTTCTAGTGAGAAGCCGTGATCACTGGAGTTCAATTCGTGTCGAATAGAGACAGATATCTACCTCAAACAATGGATAAATGGTTGCGCAACTATTCATGGATCGGTTGAAGTTAGACGTTAACACCGTTGGATGTCGGACAGCTCAATGGTCTAGAGGTTAAGTGTTCGCGTGGGAGACCCGAGGTCGTGTTTTCGACTTTCGCATGCGGGATCGTGGATGTGCACTGCTGAGGAGTGCCATACTAGGATGAAACAGCCTCCAAACCGTGCTTCCAGGTTTTCCATGGTGATCTGGCTTATTTATACTCATGAATTAAACTACTAAAATTACTATTATTTCCACAAACCCCGTTCTGATAAAATTCAAAGATCATGGTCTTCATCTGTGAAAACGTTGAACTATTGGTTCGAAACAAAGTTAATTAAAATATAATGAATTATTCAGAGATGAGTTAATTAAGCTAGAACACCAGAATGGGGACTCACATACACTGGAGAATGTGATTTATTTTCAGTCACTGTAACTAAATATTATTTCTGTAAAATGGGATTTGN]
[+] EMBL CD080807 [TCTGNGCACGAGGNATTCTTCCCCCCATTTTCTCACAAAATTAATATATACATAGTATTCAATGTTTATCAGTTTCATTCTCTTTCGTTTAAAATTCATGTGCTCACCAGTGGCTGGCTTCAAGACGATTTCATGAAGTTCTAGTGAGAAGCCGTGATCACTGGAGTTCAATTCGTGTCGAATAGAGACAGATATCTACCTCAAACAATGGATAAATGGTTGCGCAACTATTCATGGATCGGTTGAAGTTAGACGTTAACACCGTTGGATGTCGGACAGCTCAATGGTCTAGAGGTTAAGTGTTCGCGTGGGAGACCCGAGGTCGTGTTTTCGACTTTCGCATGCGGGATCGTGGATGTGCACTGCTGAGGAGTGCCATACTAGGATGAAACAGCCTCCAAACCGTGCTTCCAGGTTTTCCATGGTGATCTGGCTTATTTATACTCATGAATTAAACTACTAAAATTACTATTATTTCCACAAACCCCGTTCTGATAAAATTCAAAGATCATGGTCTTCATCTGTGAAAACGTTGAACTATTGGTTCGAAACAAAGTTAATTAAAATATAATGAATTATTCAGAGATGAGTTAATTAAGCTAGAACACCAGAATGGGGACTCACATACACTGGAGAATGTGATTTATTTTCAGTCACTGTAACTAAATATTATTTCTGTAAAATGGGATTTGN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1945#0 -ATAAAATTGAAATTTACAAGTTTATATTCTTTCTGAACCCCTAATATATTTATGATACT 59
consensus_1945#1 TCTGNGCACGAGGNATTCTTCCCCCCATTTTCTCACAAAAT-TAATATATACATAGTATT 59
* ** * * *** * ** ** ******** ** ** *
consensus_1945#0 TCTTGAGTGATTATTTAATGTCACCGGTGATGCGAAGTATTTTCATTATTTCTGTACACA 119
consensus_1945#1 C----AATGTTTATCAGTTTCATTCTCTTTCGTTTAAAATTCATGTGCTCACCA-GTGGC 114
* ** **** * * * * * *** * * *
consensus_1945#0 TAACTGAACTCTGATAATCACGGTTTTTCTTTAGAATATTTTGTTAC--ACTTTTAATAT 177
consensus_1945#1 TGGCTTCAAGACGATTTCATGAAGTTCTAGTGAGAAGCCGTGATCACTGGAGTTCAATTC 174
* ** * *** ** * * **** * * ** ** ***
consensus_1945#0 TTGTAAAATCAATAGATTGGTTCAATTCAG-TGACAAATAATTGTCTTTCTGTTTGTTTC 236
consensus_1945#1 GTGTCGAATAGAGACAGATATCTACCTCAAACAATGGATAAATGGTTGCGCAACTATTCA 234
*** *** * * * * * *** * **** ** * * **
consensus_1945#0 TTAAGTTTTCTTTGTTGGATTTCTTTTTCAGCAGAGAACACCAGAATGGGGACTCACATA 296
consensus_1945#1 TGGATCGGTTGAAGTTAGA---CGTTAACACCGTTGGATGTCGGAC----AGCTCA-ATG 286
* * * *** ** * ** ** * * * * ** **** **
consensus_1945#0 CACTGGAGAATGTGATTTATTTTCAGTCACT-GTAACTAAATATTATTTCTGTAAAAATG 355
consensus_1945#1 GTCTAGAGGTTAAGTGTTCGCGTGGGAGACCCGAGGTCGTGTTTTCGACTTTCGCATGCG 346
** *** * * ** * * ** * * ** * * *
consensus_1945#0 GATTTGTTTGTTTGTTTTTATTGGGCAAGCCAGTAGCTATCAGGACTCATTCACAAGGTG 415
consensus_1945#1 GGATCGTGGATGTGCACTGCTGAGGAGTGCCAT--ACTAGGATGAAACAGCCTCCAAACC 404
* * ** * ** * * ** **** *** * ** ** * * *
consensus_1945#0 GGTAACTCATTGGTCGTTTCAGGCTAAAAGTACTGGGGTCGAGTTCAAGAGTAGACGTCA 475
consensus_1945#1 GT--GCTTCCAGGTT-TTCCATGGTGATCTGGCTTAT-TTATACTCATGAATTAA----A 456
* ** *** ** ** * * * ** * *** ** * * *
consensus_1945#0 ACACTAAAACGGTACAGTTACATCCAGCTGACGGGTCCCAAATTGAATGAAACGAACATA 535
consensus_1945#1 CTACTAAAAT--TACTATTATTTCCA-CAAACCCCGTTCTGATAAAATTCAAAGATCATG 513
******* *** *** **** * ** * ** *** ** ** ***
consensus_1945#0 CTGGATTCTACTGCTGACTTTTATTCAACTGTGTGTTTATTTACTTGTTTTCGTCTTGTT 595
consensus_1945#1 GTCTTCATCTGTGAAAACGTTGAACTATTGGTTCGAAACAAAGTTAATTAAAATATAATG 573
* ** ** ** * * ** * * ** * * *
consensus_1945#0 TTCGGTTTACAAGTTTATGAATGATAATTATTTTGTCGTATGAAAAGAATTCTGTCATTT 655
consensus_1945#1 AATTATTCAGAGATGAGTTAATTA-AGCTAGAACACCAGAATGGGGACTCACATACACTG 632
** * * * * *** * * ** * * * ** *
consensus_1945#0 TTAAATG-AATTT---TTCTGGTACTTTN--TAAATGTAATTT--AAAATATACTGTTT- 706
consensus_1945#1 GAGAATGTGATTTATTTTCAGTCACTGTAACTAAATATTATTTCTGTAAAATGGGATTTG 692
**** **** *** * *** * ***** * **** ** ** ***
consensus_1945#0 -
consensus_1945#1 N 693
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||