cluster # 1967

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Schistosoma mansoni
cluster # 1967 cluster # 1967 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1967#0 length = 523 sequences # 1

consensus_1967#1 length = 267 sequences # 1

consensusID : consensus_1967#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 523
fasta sequence

                              [ATAGTTGTGTGTTATGCATCGTCCCAGCTGCTATCTCGATGTAAATCTGTGGTCGAAGTGAACTCTGGCTTTAAATTTGGATCAGTGTGGCTAAACTAAGAAGTGATATGGTTTCACAAAACGTCCAACTGTTGATCCGGACCTTGCTAGATCTAAATTAGGTTCCTTAGTTTTAGTTTTGGTAACTGGAAACTGAGTAGCATCCTGATACATTTAGCAGCACTGAATAATACACTCACTAGATAACAATCAATTGCTTCGTACTAATTGAATGGTCCCATTGTCAGTTTGTTTCACTATTTTTATTAGTTTTATTTCTTTGTAATCCTTTAAAGAGTAACATATTGAACAAACAGATGGGTGCATTGCTTCAAGCTAACAAACTTCGTTCAATTTTTGTCATAATGACTATGTTTATCTCTATGTTACAGGAACCGTTTCCGAAAAGGTCTCAAATAATCGAACTGCCAACTGATGGTCCTACATGTTCACATGGTCCTATGTTGAAAATAGTTGGACAGAT]

[+] EMBL CD149493             [ATAGTTGTGTGTTATGCATCGTCCCAGCTGCTATCTCGATGTAAATCTGTGGTCGAAGTGAACTCTGGCTTTAAATTTGGATCAGTGTGGCTAAACTAAGAAGTGATATGGTTTCACAAAACGTCCAACTGTTGATCCGGACCTTGCTAGATCTAAATTAGGTTCCTTAGTTTTAGTTTTGGTAACTGGAAACTGAGTAGCATCCTGATACATTTAGCAGCACTGAATAATACACTCACTAGATAACAATCAATTGCTTCGTACTAATTGAATGGTCCCATTGTCAGTTTGTTTCACTATTTTTATTAGTTTTATTTCTTTGTAATCCTTTAAAGAGTAACATATTGAACAAACAGATGGGTGCATTGCTTCAAGCTAACAAACTTCGTTCAATTTTTGTCATAATGACTATGTTTATCTCTATGTTACAGGAACCGTTTCCGAAAAGGTCTCAAATAATCGAACTGCCAACTGATGGTCCTACATGTTCACATGGTCCTATGTTGAAAATAGTTGGACAGAT]




>consensus_1967#0
ATAGTTGTGTGTTATGCATCGTCCCAGCTGCTATCTCGATGTAAATCTGTGGTCGAAGTG
AACTCTGGCTTTAAATTTGGATCAGTGTGGCTAAACTAAGAAGTGATATGGTTTCACAAA
ACGTCCAACTGTTGATCCGGACCTTGCTAGATCTAAATTAGGTTCCTTAGTTTTAGTTTT
GGTAACTGGAAACTGAGTAGCATCCTGATACATTTAGCAGCACTGAATAATACACTCACT
AGATAACAATCAATTGCTTCGTACTAATTGAATGGTCCCATTGTCAGTTTGTTTCACTAT
TTTTATTAGTTTTATTTCTTTGTAATCCTTTAAAGAGTAACATATTGAACAAACAGATGG
GTGCATTGCTTCAAGCTAACAAACTTCGTTCAATTTTTGTCATAATGACTATGTTTATCT
CTATGTTACAGGAACCGTTTCCGAAAAGGTCTCAAATAATCGAACTGCCAACTGATGGTC
CTACATGTTCACATGGTCCTATGTTGAAAATAGTTGGACAGAT

consensusID : consensus_1967#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 267
fasta sequence

                              [TGTTTGCGTTACCTATGTCTTTTAAAAGGATAGGATGAGAAGCAATGAACCGTTTCCGAAAAGGTCTCAGATAATCGAACTGCCAACTGATGGTCCTACATGTTCACATGGTCCTATGTTGAAAATAGTTGATCAGATCTCCAATTCATCTCAATATGCTTGTTCGGCATTTCGTGATAAAGGTGAATGTGCGAAGCAAGACTTGTACCACAGCAGTACCTTAAAAAATTGGTCATTGGAAGATATATTCGGAATAAGTCAGTCAGT]

[+] EMBL CD132346             [TGTTTGCGTTACCTATGTCTTTTAAAAGGATAGGATGAGAAGCAATGAACCGTTTCCGAAAAGGTCTCAGATAATCGAACTGCCAACTGATGGTCCTACATGTTCACATGGTCCTATGTTGAAAATAGTTGATCAGATCTCCAATTCATCTCAATATGCTTGTTCGGCATTTCGTGATAAAGGTGAATGTGCGAAGCAAGACTTGTACCACAGCAGTACCTTAAAAAATTGGTCATTGGAAGATATATTCGGAATAAGTCAGTCAGT]




>consensus_1967#1
TGTTTGCGTTACCTATGTCTTTTAAAAGGATAGGATGAGAAGCAATGAACCGTTTCCGAA
AAGGTCTCAGATAATCGAACTGCCAACTGATGGTCCTACATGTTCACATGGTCCTATGTT
GAAAATAGTTGATCAGATCTCCAATTCATCTCAATATGCTTGTTCGGCATTTCGTGATAA
AGGTGAATGTGCGAAGCAAGACTTGTACCACAGCAGTACCTTAAAAAATTGGTCATTGGA
AGATATATTCGGAATAAGTCAGTCAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1967#0      ATAGTTGTGTGTTATGCATCGTCCCAGCTGCTATCTCGATGTAAATCTGTGGTCGAAGTG 60
consensus_1967#1      --------------------------------------------------------TGTT 4
                                                                               ** 

consensus_1967#0      AACTCTGGCTTTAAATTTGGATCAGTGTGGCTAAACTAAGAAGTGATATGGTTTCACAAA 120
consensus_1967#1      TGCGTTACCTATGTCTTTTAAAAGGATAGGATGAG--AAGCAATGA-ACCGTTTCCGAAA 61
                        *  *  ** *   ***  *   *   ** * *   *** * *** *  *****  ***

consensus_1967#0      ACGTCC--AACTGTTGATCCGGACCTTGCTAGATCTAAATTAGGTTCCTTAGTTTTAGTT 178
consensus_1967#1      AGGTCTCAGATAATCGAACTGCCAACTGATGGTCCTACAT--GTTCACATGGTCCTA-TG 118
                      * ***    *   * ** * *     ** * *  *** **  * *  * * **  ** * 

consensus_1967#0      TTGGTAACTGGAAACTGAGTAGCATCCTGATACATTTAGCAGCACTGAATAATACACTCA 238
consensus_1967#1      TTGAAAAT----AGTTGATCAGATCTCCAATTCATCTCAATATGCTTGTTCG-GCATTTC 173
                      ***  **     *  ***  **    *  ** *** *       **   *    ** *  

consensus_1967#0      CTAGATAACAATCAATTGCTTCGTACTAATTGAATGGTCCCATTGTCAGTTTGTTTCACT 298
consensus_1967#1      GT-GATAAAGGTGAAT--GTGCGAAGCAA--GACTTGTACCACAG-CAGTACCTTAAAAA 227
                       * *****   * ***   * ** *  **  ** * ** ***  * ****   **  *  

consensus_1967#0      ATTTTTATTAGTTTTATTTCTTTGTAATCCTTTAAAGAGTAACATATTGAACAAACAGAT 358
consensus_1967#1      ATTGGTCATTGGAAGATATATTCGGAATAAGTCAGTCAGT-------------------- 267
                      ***  *  * *    ** * ** * ***   * *   ***                    

consensus_1967#0      GGGTGCATTGCTTCAAGCTAACAAACTTCGTTCAATTTTTGTCATAATGACTATGTTTAT 418
consensus_1967#1      ------------------------------------------------------------
                                                                                  

consensus_1967#0      CTCTATGTTACAGGAACCGTTTCCGAAAAGGTCTCAAATAATCGAACTGCCAACTGATGG 478
consensus_1967#1      ------------------------------------------------------------
                                                                                  

consensus_1967#0      TCCTACATGTTCACATGGTCCTATGTTGAAAATAGTTGGACAGAT 523
consensus_1967#1      ---------------------------------------------