cluster # 2005

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Schistosoma mansoni
cluster # 2005 cluster # 2005 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2005#0 length = 627 sequences # 1

consensus_2005#1 length = 465 sequences # 1

consensusID : consensus_2005#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 627
fasta sequence

                              [CTCGAGGGCCANAATTCGGCACGAGGATTGGTACACCAGCGTACTAATCCGTGCTTTTACACTGTTGGTTATTGTCGATTCTTATTAACTGGGTGTTTCGCTAAAATCTTAACGCACATCCAAAATCAACGTGGTCGTGGAATAAATACCTACCTATTAACAGTTTGGAATTTTGAAATGATAAAAGAACTGAGTGCTTCTGATGATGAGTCTGAGCCTCTGAAAATTGAGAGCTTGTGCACTAGATGCTTACAAAACGGCACAACGATTCTTATGTTAACAAAAATTTCATATTTTAAAGAGGTTGNNNNNNNNNNNNNNNGTTGTCCTCATTGTGGTTATGAGAATCGGTCTCTTATGCCAGCTTCACAAATTCAAGATAAGGGACAACGTATAACACTCAAAGTTAACAACGTGAAAGATATGAACAGACGTGTTGTTATACCAGTAGGTTCACATTTCCTTTTTCTGATGGAGTTGTATCAACAATTGAAGGAATTATAACAGGATTTGTAGATAATCTGAATAGTTTACAACCTGAAAGAAAGGAGAGTCAACCTGATTTAGCGTTGAAAATTGAGAAATTCATCGAGCAGTTGCGTACTTTGATAAAGGTGGACANNNNNN]

[+] EMBL CD081052             [CTCGAGGGCCANAATTCGGCACGAGGATTGGTACACCAGCGTACTAATCCGTGCTTTTACACTGTTGGTTATTGTCGATTCTTATTAACTGGGTGTTTCGCTAAAATCTTAACGCACATCCAAAATCAACGTGGTCGTGGAATAAATACCTACCTATTAACAGTTTGGAATTTTGAAATGATAAAAGAACTGAGTGCTTCTGATGATGAGTCTGAGCCTCTGAAAATTGAGAGCTTGTGCACTAGATGCTTACAAAACGGCACAACGATTCTTATGTTAACAAAAATTTCATATTTTAAAGAGGTTGNNNNNNNNNNNNNNNGTTGTCCTCATTGTGGTTATGAGAATCGGTCTCTTATGCCAGCTTCACAAATTCAAGATAAGGGACAACGTATAACACTCAAAGTTAACAACGTGAAAGATATGAACAGACGTGTTGTTATACCAGTAGGTTCACATTTCCTTTTTCTGATGGAGTTGTATCAACAATTGAAGGAATTATAACAGGATTTGTAGATAATCTGAATAGTTTACAACCTGAAAGAAAGGAGAGTCAACCTGATTTAGCGTTGAAAATTGAGAAATTCATCGAGCAGTTGCGTACTTTGATAAAGGTGGACANNNNNN]




>consensus_2005#0
CTCGAGGGCCANAATTCGGCACGAGGATTGGTACACCAGCGTACTAATCCGTGCTTTTAC
ACTGTTGGTTATTGTCGATTCTTATTAACTGGGTGTTTCGCTAAAATCTTAACGCACATC
CAAAATCAACGTGGTCGTGGAATAAATACCTACCTATTAACAGTTTGGAATTTTGAAATG
ATAAAAGAACTGAGTGCTTCTGATGATGAGTCTGAGCCTCTGAAAATTGAGAGCTTGTGC
ACTAGATGCTTACAAAACGGCACAACGATTCTTATGTTAACAAAAATTTCATATTTTAAA
GAGGTTGNNNNNNNNNNNNNNNGTTGTCCTCATTGTGGTTATGAGAATCGGTCTCTTATG
CCAGCTTCACAAATTCAAGATAAGGGACAACGTATAACACTCAAAGTTAACAACGTGAAA
GATATGAACAGACGTGTTGTTATACCAGTAGGTTCACATTTCCTTTTTCTGATGGAGTTG
TATCAACAATTGAAGGAATTATAACAGGATTTGTAGATAATCTGAATAGTTTACAACCTG
AAAGAAAGGAGAGTCAACCTGATTTAGCGTTGAAAATTGAGAAATTCATCGAGCAGTTGC
GTACTTTGATAAAGGTGGACANNNNNN

consensusID : consensus_2005#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 465
fasta sequence

                              [AGAGCTTGTGCACTATATGCTTACAAAACGGCACAACGATTCTTATGTTAACAAAAATTTCATATTTTAAAGAGGTTGTCATCTCATCCTTCAGTTGTCCTCATTGTGGTTATGAGAATCGGTCTCTTATGCCAGCTTCACAAATTCAAGATAAGGGACAACGTATAACACTCAAAGTTAACAACGTGAAAGATATGAACAGACGTGTTGTTATACCAGTAGGTTCAACAGTGAGCATTCCTGAATATGATTCCTCATTTCCTTTTTCTGATGGAGTTGTATCAACAATTGAAGGAATTATAACAGGATTTGTTGATAATCTGAATAGTTTACAACCGGGGGGGGGGGAGAGTCAACCTGATTTAGCGTTGAAAATTGAGAAATTCATCGAGCAGTTGCGTACTTTGATAAAGGTGGACAAGCCATTCTCACTTGTTATAGATGATCCATCATGAAATGGATTCA]

[+] EMBL AI976774             [AGAGCTTGTGCACTATATGCTTACAAAACGGCACAACGATTCTTATGTTAACAAAAATTTCATATTTTAAAGAGGTTGTCATCTCATCCTTCAGTTGTCCTCATTGTGGTTATGAGAATCGGTCTCTTATGCCAGCTTCACAAATTCAAGATAAGGGACAACGTATAACACTCAAAGTTAACAACGTGAAAGATATGAACAGACGTGTTGTTATACCAGTAGGTTCAACAGTGAGCATTCCTGAATATGATTCCTCATTTCCTTTTTCTGATGGAGTTGTATCAACAATTGAAGGAATTATAACAGGATTTGTTGATAATCTGAATAGTTTACAACCGGGGGGGGGGGAGAGTCAACCTGATTTAGCGTTGAAAATTGAGAAATTCATCGAGCAGTTGCGTACTTTGATAAAGGTGGACAAGCCATTCTCACTTGTTATAGATGATCCATCATGAAATGGATTCA]




>consensus_2005#1
AGAGCTTGTGCACTATATGCTTACAAAACGGCACAACGATTCTTATGTTAACAAAAATTT
CATATTTTAAAGAGGTTGTCATCTCATCCTTCAGTTGTCCTCATTGTGGTTATGAGAATC
GGTCTCTTATGCCAGCTTCACAAATTCAAGATAAGGGACAACGTATAACACTCAAAGTTA
ACAACGTGAAAGATATGAACAGACGTGTTGTTATACCAGTAGGTTCAACAGTGAGCATTC
CTGAATATGATTCCTCATTTCCTTTTTCTGATGGAGTTGTATCAACAATTGAAGGAATTA
TAACAGGATTTGTTGATAATCTGAATAGTTTACAACCGGGGGGGGGGGAGAGTCAACCTG
ATTTAGCGTTGAAAATTGAGAAATTCATCGAGCAGTTGCGTACTTTGATAAAGGTGGACA
AGCCATTCTCACTTGTTATAGATGATCCATCATGAAATGGATTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2005#0      CTCGAGGGCCANAATTCGGCACGAGGATTGGTACACCAGCGTACTAATCCGTGCTTTTAC 60
consensus_2005#1      ------------------------------------------------------------
                                                                                  

consensus_2005#0      ACTGTTGGTTATTGTCGATTCTTATTAACTGGGTGTTTCGCTAAAATCTTAACGCACATC 120
consensus_2005#1      ------------------------------------------------------------
                                                                                  

consensus_2005#0      CAAAATCAACGTGGTCGTGGAATAAATACCTACCTATTAACAGTTTGGAATTTTGAAATG 180
consensus_2005#1      ------------------------------------------------------------
                                                                                  

consensus_2005#0      ATAAAAGAACTGAGTGCTTCTGATGATGAGTCTGAGCCTCTGAAAATTGAGAGCTTGTGC 240
consensus_2005#1      -------------------------------------------------AGAGCTTGTGC 11
                                                                       ***********

consensus_2005#0      ACTAGATGCTTACAAAACGGCACAACGATTCTTATGTTAACAAAAATTTCATATTTTAAA 300
consensus_2005#1      ACTATATGCTTACAAAACGGCACAACGATTCTTATGTTAACAAAAATTTCATATTTTAAA 71
                      **** *******************************************************

consensus_2005#0      GAGGTTGNNNNNNNNNNNNNNNGTTGTCCTCATTGTGGTTATGAGAATCGGTCTCTTATG 360
consensus_2005#1      GAGGTTGTCATCTCATCCTTCAGTTGTCCTCATTGTGGTTATGAGAATCGGTCTCTTATG 131
                      *******               **************************************

consensus_2005#0      CCAGCTTCACAAATTCAAGATAAGGGACAACGTATAACACTCAAAGTTAACAACGTGAAA 420
consensus_2005#1      CCAGCTTCACAAATTCAAGATAAGGGACAACGTATAACACTCAAAGTTAACAACGTGAAA 191
                      ************************************************************

consensus_2005#0      GATATGAACAGACGTGTTGTTATACCAGTAGGTTCA------------------------ 456
consensus_2005#1      GATATGAACAGACGTGTTGTTATACCAGTAGGTTCAACAGTGAGCATTCCTGAATATGAT 251
                      ************************************                        

consensus_2005#0      ----CATTTCCTTTTTCTGATGGAGTTGTATCAACAATTGAAGGAATTATAACAGGATTT 512
consensus_2005#1      TCCTCATTTCCTTTTTCTGATGGAGTTGTATCAACAATTGAAGGAATTATAACAGGATTT 311
                          ********************************************************

consensus_2005#0      GTAGATAATCTGAATAGTTTACAACCTGAAAGAAAGGAGAGTCAACCTGATTTAGCGTTG 572
consensus_2005#1      GTTGATAATCTGAATAGTTTACAACCGGGGGGGGGGGAGAGTCAACCTGATTTAGCGTTG 371
                      ** *********************** *   *   *************************

consensus_2005#0      AAAATTGAGAAATTCATCGAGCAGTTGCGTACTTTGATAAAGGTGGACANNNNNN----- 627
consensus_2005#1      AAAATTGAGAAATTCATCGAGCAGTTGCGTACTTTGATAAAGGTGGACAAGCCATTCTCA 431
                      *************************************************           

consensus_2005#0      ----------------------------------
consensus_2005#1      CTTGTTATAGATGATCCATCATGAAATGGATTCA 465