cluster # 2029

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Schistosoma mansoni
cluster # 2029 cluster # 2029 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2029#0 length = 337 sequences # 1

consensus_2029#1 length = 261 sequences # 1

consensusID : consensus_2029#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 337
fasta sequence

                              [AAAACATCTCTCTTGACATTGTTAAAAAGGAGATATTTTTTCTTGTGCTGTTTTGGTCATACATTTGCTCCCTTGTCTTGACAAACTTCATTGCCCTCCTAAGATCCTCACTCGTTGCAGCTTGTGCTCAGTCGGGAAACTCGATTCGTCCTCCTCCAAGCAAGCATCTCTACCAAAATGTCGCTCTGGGAAGTGGTGCCGTTGCTACTAAAGATCAGTGTGGCCTTGGATGGCCTCCACATGACTCGCTTCATTTTTTTCTTGGTAGCTGGTTGGAGCTTAACATTCTTTTGCTATTGCGGGGTCTCGTACTGTAGCCAACGTAACAGGGCGGAAA]

[+] EMBL SMAA69302            [AAAACATCTCTCTTGACATTGTTAAAAAGGAGATATTTTTTCTTGTGCTGTTTTGGTCATACATTTGCTCCCTTGTCTTGACAAACTTCATTGCCCTCCTAAGATCCTCACTCGTTGCAGCTTGTGCTCAGTCGGGAAACTCGATTCGTCCTCCTCCAAGCAAGCATCTCTACCAAAATGTCGCTCTGGGAAGTGGTGCCGTTGCTACTAAAGATCAGTGTGGCCTTGGATGGCCTCCACATGACTCGCTTCATTTTTTTCTTGGTAGCTGGTTGGAGCTTAACATTCTTTTGCTATTGCGGGGTCTCGTACTGTAGCCAACGTAACAGGGCGGAAA]




>consensus_2029#0
AAAACATCTCTCTTGACATTGTTAAAAAGGAGATATTTTTTCTTGTGCTGTTTTGGTCAT
ACATTTGCTCCCTTGTCTTGACAAACTTCATTGCCCTCCTAAGATCCTCACTCGTTGCAG
CTTGTGCTCAGTCGGGAAACTCGATTCGTCCTCCTCCAAGCAAGCATCTCTACCAAAATG
TCGCTCTGGGAAGTGGTGCCGTTGCTACTAAAGATCAGTGTGGCCTTGGATGGCCTCCAC
ATGACTCGCTTCATTTTTTTCTTGGTAGCTGGTTGGAGCTTAACATTCTTTTGCTATTGC
GGGGTCTCGTACTGTAGCCAACGTAACAGGGCGGAAA

consensusID : consensus_2029#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 261
fasta sequence

                              [GATTCGACCGGGTACCGATCGGTTTAGAAACATTTTGACATCTAAAAGAGATTTTCTGCCTGTTTCGGTCATACATTTGCTCCCTTGTCTTGACAAACTTCATTACCCCTCCTAAGATCCTCACTCGTTGCCAGCTTGTCGTCAGTCCGGGAAATCGATTCGTCCTCCTCCAAGCAAGCATCTCTACCAAAATGCCGCTCTGGGAAAGCCGNNAGATTGCTCCACTAAAGATCAGCTNNNTTGGATTAGCCTCCACATGAT]

[+] EMBL SMAA69319            [GATTCGACCGGGTACCGATCGGTTTAGAAACATTTTGACATCTAAAAGAGATTTTCTGCCTGTTTCGGTCATACATTTGCTCCCTTGTCTTGACAAACTTCATTACCCCTCCTAAGATCCTCACTCGTTGCCAGCTTGTCGTCAGTCCGGGAAATCGATTCGTCCTCCTCCAAGCAAGCATCTCTACCAAAATGCCGCTCTGGGAAAGCCGNNAGATTGCTCCACTAAAGATCAGCTNNNTTGGATTAGCCTCCACATGAT]




>consensus_2029#1
GATTCGACCGGGTACCGATCGGTTTAGAAACATTTTGACATCTAAAAGAGATTTTCTGCC
TGTTTCGGTCATACATTTGCTCCCTTGTCTTGACAAACTTCATTACCCCTCCTAAGATCC
TCACTCGTTGCCAGCTTGTCGTCAGTCCGGGAAATCGATTCGTCCTCCTCCAAGCAAGCA
TCTCTACCAAAATGCCGCTCTGGGAAAGCCGNNAGATTGCTCCACTAAAGATCAGCTNNN
TTGGATTAGCCTCCACATGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2029#0      ------------AAAACATCTCTCTTGACAT-TGTTAAAAAGGAGATATTTTTTCTTGTG 47
consensus_2029#1      GATTCGACCGGGTACCGATCGGTTTAGAAACATTTTGACATCTAAAAGAGATTTTCTGC- 59
                                   *   ***  * * ** *  * ** * *   * *     ***  **  

consensus_2029#0      CTGTTTTGGTCATACATTTGCTCCCTTGTCTTGACAAACTTCATTGCCC-TCCTAAGATC 106
consensus_2029#1      CTGTTTCGGTCATACATTTGCTCCCTTGTCTTGACAAACTTCATTACCCCTCCTAAGATC 119
                      ****** ************************************** *** **********

consensus_2029#0      CTCACTCGTTGC-AGCTTGTGCTCAGTCGGGAAACTCGATTCGTCCTCCTCCAAGCAAGC 165
consensus_2029#1      CTCACTCGTTGCCAGCTTGTCGTCAGTCCGGGAAATCGATTCGTCCTCCTCCAAGCAAGC 179
                      ************ *******  ****** ** ** *************************

consensus_2029#0      ATCTCTACCAAAATGTCGCTCTGGGAA-GTGGTGCCGTTGCT--ACTAAAGATCAGTGTG 222
consensus_2029#1      ATCTCTACCAAAATGCCGCTCTGGGAAAGCCGNNAGATTGCTCCACTAAAGATCAGC-TN 238
                      *************** *********** *  *     *****  ************  * 

consensus_2029#0      GCCTTGGATGGCCTCCACATGACTCGCTTCATTTTTTTCTTGGTAGCTGGTTGGAGCTTA 282
consensus_2029#1      NNTTGGATTAGCCTCCACATGAT------------------------------------- 261
                         * *  * ************                                      

consensus_2029#0      ACATTCTTTTGCTATTGCGGGGTCTCGTACTGTAGCCAACGTAACAGGGCGGAAA 337
consensus_2029#1      -------------------------------------------------------