cluster # 2067

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Schistosoma mansoni
cluster # 2067 cluster # 2067 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2067#0 length = 636 sequences # 1

consensus_2067#1 length = 579 sequences # 1

consensusID : consensus_2067#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 636
fasta sequence

                              [AATTATCCTCATCACTATAAATTATCTAAAAAAGAGATTAAACATATTCTACCATCATTAACTAACATGACGATGATGAAGCCGACAACAACAACAGTATCAGTAACACCTGTCACATCAACTACTGATAATATTATGAGTAATGTACAACGATATCACCATACAAAACTATACCACCCACACGTAGTAGTACCTCCATCAACAGCACTACCATCATCATCATCACCATCGAATTGGATAATAATACCAAATCAGAAACAACGGGATAACCAGAAACAAAATTGTCACCATGGTGGTGATGAGTCGTCGTCTTGTATTTCACAAAACGATAATGAAAGTGAAACAACTAGTGATGGGAATGATTTACGTCAACAGAATTCTAAATTCAAATATAAAATATTACCAAGAGGAATAGACCAATCTATGGATCCGATGAAAACAATAAGAAAATCAGCAAAACGAATGAAATATTACGAATCGGACTCGGCTAATATTGATCAAGATTCAATTTCCCGAGAATTACTGAATAATAATGTTGCTAGGAAGAATAGTTCACCGACAACCCATAGTCTTATCACAAGCACTACTAATATTAATAATACTATCTGCAAACCAATTTTTGAAAATCTACATTTA]

[+] EMBL CD132729             [AATTATCCTCATCACTATAAATTATCTAAAAAAGAGATTAAACATATTCTACCATCATTAACTAACATGACGATGATGAAGCCGACAACAACAACAGTATCAGTAACACCTGTCACATCAACTACTGATAATATTATGAGTAATGTACAACGATATCACCATACAAAACTATACCACCCACACGTAGTAGTACCTCCATCAACAGCACTACCATCATCATCATCACCATCGAATTGGATAATAATACCAAATCAGAAACAACGGGATAACCAGAAACAAAATTGTCACCATGGTGGTGATGAGTCGTCGTCTTGTATTTCACAAAACGATAATGAAAGTGAAACAACTAGTGATGGGAATGATTTACGTCAACAGAATTCTAAATTCAAATATAAAATATTACCAAGAGGAATAGACCAATCTATGGATCCGATGAAAACAATAAGAAAATCAGCAAAACGAATGAAATATTACGAATCGGACTCGGCTAATATTGATCAAGATTCAATTTCCCGAGAATTACTGAATAATAATGTTGCTAGGAAGAATAGTTCACCGACAACCCATAGTCTTATCACAAGCACTACTAATATTAATAATACTATCTGCAAACCAATTTTTGAAAATCTACATTTA]




>consensus_2067#0
AATTATCCTCATCACTATAAATTATCTAAAAAAGAGATTAAACATATTCTACCATCATTA
ACTAACATGACGATGATGAAGCCGACAACAACAACAGTATCAGTAACACCTGTCACATCA
ACTACTGATAATATTATGAGTAATGTACAACGATATCACCATACAAAACTATACCACCCA
CACGTAGTAGTACCTCCATCAACAGCACTACCATCATCATCATCACCATCGAATTGGATA
ATAATACCAAATCAGAAACAACGGGATAACCAGAAACAAAATTGTCACCATGGTGGTGAT
GAGTCGTCGTCTTGTATTTCACAAAACGATAATGAAAGTGAAACAACTAGTGATGGGAAT
GATTTACGTCAACAGAATTCTAAATTCAAATATAAAATATTACCAAGAGGAATAGACCAA
TCTATGGATCCGATGAAAACAATAAGAAAATCAGCAAAACGAATGAAATATTACGAATCG
GACTCGGCTAATATTGATCAAGATTCAATTTCCCGAGAATTACTGAATAATAATGTTGCT
AGGAAGAATAGTTCACCGACAACCCATAGTCTTATCACAAGCACTACTAATATTAATAAT
ACTATCTGCAAACCAATTTTTGAAAATCTACATTTA

consensusID : consensus_2067#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 579
fasta sequence

                              [ACTGTTCTTTCAATGAAAAAGGATCTGAACGACTAACCTCTGACTTATAGTATGGTTTTGGTGTAGTTTGTTGTTTAACTGTAGGAGAATGAGATCCCTTTGATAATTTAGCAACAGGTATAACTAGTGTATTTGGTAATTGTCCAAGACTACGGTTAGTTGGATATTCATATAAATTGAATGAATTATATGTTGGTTTTTTCTTTTGTACTTCTCTTAATTGATGTATAGTATTGGAGTGGTAATTTATTGATTGATTCCATGCTGGACTCGAGTCTAATTTATGTATATAACCTAAAGGTTTGGTTGCACGATCAAAAATTTCAGCTAATCCAGTGGTTGTTGACTTTAAATCATATTTTATTACATTATCAATATCACTTGTTTGTTCTTGATCTTCAACATCATCAACAGCATTACCATCATCACCATCACCATCGAATTGGATAATAATACCAAATCAGAAACAACGGGATAACCAGAAACAAAATTGTCACCATGGTGGTGATGAGTCGTCGTCTTGTATTTCACANAACGAATATGAAAGTGAAACAACTAGTGATGGGAATGATNTACGNT]

[+] EMBL CD137780             [ACTGTTCTTTCAATGAAAAAGGATCTGAACGACTAACCTCTGACTTATAGTATGGTTTTGGTGTAGTTTGTTGTTTAACTGTAGGAGAATGAGATCCCTTTGATAATTTAGCAACAGGTATAACTAGTGTATTTGGTAATTGTCCAAGACTACGGTTAGTTGGATATTCATATAAATTGAATGAATTATATGTTGGTTTTTTCTTTTGTACTTCTCTTAATTGATGTATAGTATTGGAGTGGTAATTTATTGATTGATTCCATGCTGGACTCGAGTCTAATTTATGTATATAACCTAAAGGTTTGGTTGCACGATCAAAAATTTCAGCTAATCCAGTGGTTGTTGACTTTAAATCATATTTTATTACATTATCAATATCACTTGTTTGTTCTTGATCTTCAACATCATCAACAGCATTACCATCATCACCATCACCATCGAATTGGATAATAATACCAAATCAGAAACAACGGGATAACCAGAAACAAAATTGTCACCATGGTGGTGATGAGTCGTCGTCTTGTATTTCACANAACGAATATGAAAGTGAAACAACTAGTGATGGGAATGATNTACGNT]




>consensus_2067#1
ACTGTTCTTTCAATGAAAAAGGATCTGAACGACTAACCTCTGACTTATAGTATGGTTTTG
GTGTAGTTTGTTGTTTAACTGTAGGAGAATGAGATCCCTTTGATAATTTAGCAACAGGTA
TAACTAGTGTATTTGGTAATTGTCCAAGACTACGGTTAGTTGGATATTCATATAAATTGA
ATGAATTATATGTTGGTTTTTTCTTTTGTACTTCTCTTAATTGATGTATAGTATTGGAGT
GGTAATTTATTGATTGATTCCATGCTGGACTCGAGTCTAATTTATGTATATAACCTAAAG
GTTTGGTTGCACGATCAAAAATTTCAGCTAATCCAGTGGTTGTTGACTTTAAATCATATT
TTATTACATTATCAATATCACTTGTTTGTTCTTGATCTTCAACATCATCAACAGCATTAC
CATCATCACCATCACCATCGAATTGGATAATAATACCAAATCAGAAACAACGGGATAACC
AGAAACAAAATTGTCACCATGGTGGTGATGAGTCGTCGTCTTGTATTTCACANAACGAAT
ATGAAAGTGAAACAACTAGTGATGGGAATGATNTACGNT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2067#0      AATTATCCTCATCACTATAAATTATCTAAAAAAGAGATTAAACATATTCTACCATCATTA 60
consensus_2067#1      -------------ACTGTTCTTTCAATGAAAAAGGATCTGAACG-ACTAACCTCTGACTT 46
                                   *** *   **   * ******    * ***  * *   *  * * * 

consensus_2067#0      ACTAACATGACGATGATGAAGCCGACAAC--AACAACAGTATCAGTAACACCTGTCACAT 118
consensus_2067#1      A-TAGTATGGTTTTGGTGTAGTTTGTTGTTTAACTGTAGGAG-AATGAGATCCCTTTGAT 104
                      * **  ***    ** ** **          ***   ** *  * * * * *  *   **

consensus_2067#0      CAACTACTGATAATATTATGAGTAATGTACAACGATATCACCATACAAAACTATACCACC 178
consensus_2067#1      AATTTAGCAACAGG--TATAACTAGTGTATT-TGGTA--ATTGTCCAAGACTA---CGGT 156
                       *  **   * *    *** * ** ****    * **  *   * *** ****   *   

consensus_2067#0      CACACGTAGTAGTACCTCCATCAACAGCACTACCATCATCATCATCACCATCGAATTGGA 238
consensus_2067#1      TAGTTGGATATTCATATAAATTGAATGAATTAT-ATGTTGGTTTTTTCTTTTGTAC---- 211
                       *   * *     *  *  **  *  * * **  **  *  *  *  *  * * *     

consensus_2067#0      TAATAATACCAAATCAGAAACAACGGGATAACCAGAAACAAAATTGTCACCATGGTGGTG 298
consensus_2067#1      TTCTCTTAATTGATGTATAGTATTGGAGTGGTAATTTATTGA-TTGATTCCATGCTGGAC 270
                      *  *  **    **    *  *  **  *    *   *   * ***   ***** ***  

consensus_2067#0      ATGAGTCGTCGTCTTGTATTTCACAAAACGATAATGAAAGTGAAACAACTAGTGATGGGA 358
consensus_2067#1      TCGAGTCTAATTTATGTATATAACCTAAAGGTTT----GGTTGCACGATCAAAAATTTCA 326
                        *****    *  ***** * **  ** * *       **   ** *  *   **   *

consensus_2067#0      ATGATTTACGTCAACAG-AATTCTAAATTCAAATATAAAATATTACCAAGAGGAATAGAC 417
consensus_2067#1      GCTAATCCAGTGGTTGTTGACTTTAAATCATATTTTATTACATTATCAATATCACTTGTT 386
                         * *   **        * * *****   * * **  * **** *** *  * * *  

consensus_2067#0      CAATCTATGGATCCGATGAAAACAATAAGAAAATCAGCAAAACGAATGAAATATTACGAA 477
consensus_2067#1      TGTTCTTGATCTTCAACATCATCAACAGCATTACCATCATCACCATCACCAT----CGAA 442
                         ***     * * *    * *** *  *  * ** **  ** *     **    ****

consensus_2067#0      TCGGACTCGGCTAATATTGATCAAGATTCAATTTCCCGAGAATTACTGAATAATAATGTT 537
consensus_2067#1      TTGGAT---AATAATACCAAATCAGAAACAAC------GGGATAACCAGA-AACAAAATT 492
                      * ***      *****   *   ***  ***        * ** **   * ** **  **

consensus_2067#0      GCTAGGAAGAATAGTTCACCGACAACCCATAGTCTTATCACAAGCACTACTAATATTAAT 597
consensus_2067#1      GTCACCATGG-TGGT-----GATGAGTCGTCGTCTTGTATTTCACANAACGAATATGAA- 545
                      *  *  * *  * **     **  *  * * ***** *      **  ** ***** ** 

consensus_2067#0      AATACTATCTGCAAACCAATTTTTGAAA--ATCTACATTTA 636
consensus_2067#1      AGTGAAAC-----AACTAGTGATGGGAATGATNTACGNT-- 579
                      * *   *      *** * *  * * **  ** ***  *