cluster # 2164

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Schistosoma mansoni
cluster # 2164 cluster # 2164 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2164#0 length = 474 sequences # 1

consensus_2164#1 length = 407 sequences # 1

consensusID : consensus_2164#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 474
fasta sequence

                              [TACAGTAACATCAGTTCAAAACTATGAATTTGCCAATACTTGGCACGACATTCAACAAAACTGTTCGTTTTCTTCAACTGTCTTTTCACTTGTAAGTGGAATGTTTGTTTATTTCTGTTATATTCACTTCATTCTTTATTATTATGTCATATAGACATTTGGCATTATTGTGATTGCATTCGGTATGAAACTACCAACCAAACTATTTAGATATAAGAGGATATTGCAAGCAACCATACCTCCCATCTTTCCAACGGCTACTTTCTCAGGAAGTCTCAGTATATTAGCTACATGTATTGGAATATTAGGAATATTGAATGAAAGAAACATGATTATGTATCTGCATCTGTGTACTTTGACTATTGTGATGATCATCGAAATAGGCATAGCATCATCATCCAAATTAATGAAAGATCAAGTTAGTTCAAATCTCACTTTATCCGATGAATCTTAATCCTTATCACGTTGACAGTT]

[+] EMBL CD083343             [TACAGTAACATCAGTTCAAAACTATGAATTTGCCAATACTTGGCACGACATTCAACAAAACTGTTCGTTTTCTTCAACTGTCTTTTCACTTGTAAGTGGAATGTTTGTTTATTTCTGTTATATTCACTTCATTCTTTATTATTATGTCATATAGACATTTGGCATTATTGTGATTGCATTCGGTATGAAACTACCAACCAAACTATTTAGATATAAGAGGATATTGCAAGCAACCATACCTCCCATCTTTCCAACGGCTACTTTCTCAGGAAGTCTCAGTATATTAGCTACATGTATTGGAATATTAGGAATATTGAATGAAAGAAACATGATTATGTATCTGCATCTGTGTACTTTGACTATTGTGATGATCATCGAAATAGGCATAGCATCATCATCCAAATTAATGAAAGATCAAGTTAGTTCAAATCTCACTTTATCCGATGAATCTTAATCCTTATCACGTTGACAGTT]




>consensus_2164#0
TACAGTAACATCAGTTCAAAACTATGAATTTGCCAATACTTGGCACGACATTCAACAAAA
CTGTTCGTTTTCTTCAACTGTCTTTTCACTTGTAAGTGGAATGTTTGTTTATTTCTGTTA
TATTCACTTCATTCTTTATTATTATGTCATATAGACATTTGGCATTATTGTGATTGCATT
CGGTATGAAACTACCAACCAAACTATTTAGATATAAGAGGATATTGCAAGCAACCATACC
TCCCATCTTTCCAACGGCTACTTTCTCAGGAAGTCTCAGTATATTAGCTACATGTATTGG
AATATTAGGAATATTGAATGAAAGAAACATGATTATGTATCTGCATCTGTGTACTTTGAC
TATTGTGATGATCATCGAAATAGGCATAGCATCATCATCCAAATTAATGAAAGATCAAGT
TAGTTCAAATCTCACTTTATCCGATGAATCTTAATCCTTATCACGTTGACAGTT

consensusID : consensus_2164#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 407
fasta sequence

                              [ATAAACGGGATTCAGTGTGAAACCAGTCAACTAGNAATCGCGTTTTCAGGAAGAGAACGAAACTCTTGTGGCGATCCCTTACAGTAACATTCAGTTCAAAACTATGAATTGGNCAATACTTGGACGACATTCAACAAAACTGTTCGTTTTCTTCAACTGTCTTTTCATTACATTTGGCATTATTGTGATTGCATTCGGTATGAAACTACCAACCAAACTATTTAGATATAAGAGGATATTGCAAGCAACCATACCTCCCATCTTTCCAACTGCTACTTTCTCAGGAAGTCTCAGTATATTAGCTACATGTATTGGAATATTAGGAATATNGAATGAAAGAAACATGATTATGTATCTGCATCTGTGTACTTGGACTATGGTGATGATCACCGAAATAGGCATAGCAT]

[+] EMBL SM921                [ATAAACGGGATTCAGTGTGAAACCAGTCAACTAGNAATCGCGTTTTCAGGAAGAGAACGAAACTCTTGTGGCGATCCCTTACAGTAACATTCAGTTCAAAACTATGAATTGGNCAATACTTGGACGACATTCAACAAAACTGTTCGTTTTCTTCAACTGTCTTTTCATTACATTTGGCATTATTGTGATTGCATTCGGTATGAAACTACCAACCAAACTATTTAGATATAAGAGGATATTGCAAGCAACCATACCTCCCATCTTTCCAACTGCTACTTTCTCAGGAAGTCTCAGTATATTAGCTACATGTATTGGAATATTAGGAATATNGAATGAAAGAAACATGATTATGTATCTGCATCTGTGTACTTGGACTATGGTGATGATCACCGAAATAGGCATAGCAT]




>consensus_2164#1
ATAAACGGGATTCAGTGTGAAACCAGTCAACTAGNAATCGCGTTTTCAGGAAGAGAACGA
AACTCTTGTGGCGATCCCTTACAGTAACATTCAGTTCAAAACTATGAATTGGNCAATACT
TGGACGACATTCAACAAAACTGTTCGTTTTCTTCAACTGTCTTTTCATTACATTTGGCAT
TATTGTGATTGCATTCGGTATGAAACTACCAACCAAACTATTTAGATATAAGAGGATATT
GCAAGCAACCATACCTCCCATCTTTCCAACTGCTACTTTCTCAGGAAGTCTCAGTATATT
AGCTACATGTATTGGAATATTAGGAATATNGAATGAAAGAAACATGATTATGTATCTGCA
TCTGTGTACTTGGACTATGGTGATGATCACCGAAATAGGCATAGCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2164#0      -TACAGTAACATCAGTTCAAAACTA-TGAATTTGCCAATACTTGGCACGACATTCAACAA 58
consensus_2164#1      ATAAACGGGATTCAGTGTGAAACCAGTCAACTAGNAATCGCGTTTTCAGGAAGAGAACGA 60
                       ** *      *****   **** * * ** * *  *   * *     *  *   *** *

consensus_2164#0      AACTGTT----CGTTTTCTTCAACTGTCTTTTCACTTGTAAGTG-GAATGTTTGTTTATT 113
consensus_2164#1      AACTCTTGTGGCGATCCCTTACAGTAACATTCAGTTCAAAACTATGAATTGGNCAATACT 120
                      **** **    ** *  ***  * *  * **    *   ** *  ****       ** *

consensus_2164#0      TCTGTTATATTCAC--------TTCATTCTTTATTATTATGTCATATAGACATTTGGCAT 165
consensus_2164#1      TGGACGACATTCAACAAAACTGTTCGTTTTCTTCAACTGTCTTTTCATTACATTTGGCAT 180
                      *     * *****         *** ** * *   * * * *  *    ***********

consensus_2164#0      TATTGTGATTGCATTCGGTATGAAACTACCAACCAAACTATTTAGATATAAGAGGATATT 225
consensus_2164#1      TATTGTGATTGCATTCGGTATGAAACTACCAACCAAACTATTTAGATATAAGAGGATATT 240
                      ************************************************************

consensus_2164#0      GCAAGCAACCATACCTCCCATCTTTCCAACGGCTACTTTCTCAGGAAGTCTCAGTATATT 285
consensus_2164#1      GCAAGCAACCATACCTCCCATCTTTCCAACTGCTACTTTCTCAGGAAGTCTCAGTATATT 300
                      ****************************** *****************************

consensus_2164#0      AGCTACATGTATTGGAATATTAGGAATATTGAATGAAAGAAACATGATTATGTATCTGCA 345
consensus_2164#1      AGCTACATGTATTGGAATATTAGGAATATNGAATGAAAGAAACATGATTATGTATCTGCA 360
                      ***************************** ******************************

consensus_2164#0      TCTGTGTACTTTGACTATTGTGATGATCATCGAAATAGGCATAGCATCATCATCCAAATT 405
consensus_2164#1      TCTGTGTACTTGGACTATGGTGATGATCACCGAAATAGGCATAGCAT------------- 407
                      *********** ****** ********** *****************             

consensus_2164#0      AATGAAAGATCAAGTTAGTTCAAATCTCACTTTATCCGATGAATCTTAATCCTTATCACG 465
consensus_2164#1      ------------------------------------------------------------
                                                                                  

consensus_2164#0      TTGACAGTT 474
consensus_2164#1      ---------