cluster # 2171

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Schistosoma mansoni
cluster # 2171 cluster # 2171 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2171#0 length = 501 sequences # 1

consensus_2171#1 length = 461 sequences # 1

consensusID : consensus_2171#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 501
fasta sequence

                              [AAGCTCTGACTGATGTTAGCTACGAAACGTAGAACGCCAATCACCAGCATCATCCCACATACAACAGTAAGCCGACTAAACAGCAGATCTGGATTAGATCGCAAAGGAAAAATGCTATACATTTCAGTATACAGAATCGCAAAAGCTGGTTGAGTGGTCCCACTAATCACACAGCAAATACACCCCAAAACTACCTCTGATAGTTTTGGGGTGTATTTGCTGTGTGATTAGTTTGCGAATCTGGGACACACGATGAACTTGTGGCTGAAAAGGGTCTTTATGCTGCGATGCTTAGTAACCAGAGAATATTGGAAAGTGCTGAGAACGATGATAGTGAATTATTTGATGAAGGATCTCAAAATAAATATGTCGTCAGTGGAAAAGACTTGTTGACAAAATCAGACAATATTTGTAAAATGGATAATGGTGAGGAAAGTATATCTGAAACAACTGGAAATGCTCCTTATGGAAATTTTTCCCTTATTTCAACAATTTCAGTCC]

[+] EMBL CD185559             [AAGCTCTGACTGATGTTAGCTACGAAACGTAGAACGCCAATCACCAGCATCATCCCACATACAACAGTAAGCCGACTAAACAGCAGATCTGGATTAGATCGCAAAGGAAAAATGCTATACATTTCAGTATACAGAATCGCAAAAGCTGGTTGAGTGGTCCCACTAATCACACAGCAAATACACCCCAAAACTACCTCTGATAGTTTTGGGGTGTATTTGCTGTGTGATTAGTTTGCGAATCTGGGACACACGATGAACTTGTGGCTGAAAAGGGTCTTTATGCTGCGATGCTTAGTAACCAGAGAATATTGGAAAGTGCTGAGAACGATGATAGTGAATTATTTGATGAAGGATCTCAAAATAAATATGTCGTCAGTGGAAAAGACTTGTTGACAAAATCAGACAATATTTGTAAAATGGATAATGGTGAGGAAAGTATATCTGAAACAACTGGAAATGCTCCTTATGGAAATTTTTCCCTTATTTCAACAATTTCAGTCC]




>consensus_2171#0
AAGCTCTGACTGATGTTAGCTACGAAACGTAGAACGCCAATCACCAGCATCATCCCACAT
ACAACAGTAAGCCGACTAAACAGCAGATCTGGATTAGATCGCAAAGGAAAAATGCTATAC
ATTTCAGTATACAGAATCGCAAAAGCTGGTTGAGTGGTCCCACTAATCACACAGCAAATA
CACCCCAAAACTACCTCTGATAGTTTTGGGGTGTATTTGCTGTGTGATTAGTTTGCGAAT
CTGGGACACACGATGAACTTGTGGCTGAAAAGGGTCTTTATGCTGCGATGCTTAGTAACC
AGAGAATATTGGAAAGTGCTGAGAACGATGATAGTGAATTATTTGATGAAGGATCTCAAA
ATAAATATGTCGTCAGTGGAAAAGACTTGTTGACAAAATCAGACAATATTTGTAAAATGG
ATAATGGTGAGGAAAGTATATCTGAAACAACTGGAAATGCTCCTTATGGAAATTTTTCCC
TTATTTCAACAATTTCAGTCC

consensusID : consensus_2171#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 461
fasta sequence

                              [AAGAAGCTGCGAAGCTTGCCAACGCCCACGGATTCATTCAACAACTCCCAGATAGAATATTGGAAAGTGCTGAGAACGATGATAGTGAATTATTTGATGAAGGATCTCAAAATAAATATGTCGTCAGTGGAAAAGACTTGTTGACAAAATCAGACAATATTTGTAAAATGGATAATGGTGAGGAAAGTATATCTGAAACAACTGGAAATGTTCCTTATGGAAATTTTTCCCTTATTTCAACAATTTCAGTCCTACGTAATCAAAAAAAAGGTATCAAAATTTCCCCAACATTAAGGATTTTAAAACTTAATAGACCTGAACTACCTCTGATAGTTTTGGGGTGTATTTGCTGTGTGATTAGTGGGACCACTCAACCAGCTTTTGCGATTCTGTATACTGAAATGTATAGCATTTCTCCTTTGCGATCTATCCAGATCTGCTGTTTNAGTCGACTACTGTGA]

[-] EMBL CD064198             [AAGAAGCTGCGAAGCTTGCCAACGCCCACGGATTCATTCAACAACTCCCAGATAGAATATTGGAAAGTGCTGAGAACGATGATAGTGAATTATTTGATGAAGGATCTCAAAATAAATATGTCGTCAGTGGAAAAGACTTGTTGACAAAATCAGACAATATTTGTAAAATGGATAATGGTGAGGAAAGTATATCTGAAACAACTGGAAATGTTCCTTATGGAAATTTTTCCCTTATTTCAACAATTTCAGTCCTACGTAATCAAAAAAAAGGTATCAAAATTTCCCCAACATTAAGGATTTTAAAACTTAATAGACCTGAACTACCTCTGATAGTTTTGGGGTGTATTTGCTGTGTGATTAGTGGGACCACTCAACCAGCTTTTGCGATTCTGTATACTGAAATGTATAGCATTTCTCCTTTGCGATCTATCCAGATCTGCTGTTTNAGTCGACTACTGTGA]




>consensus_2171#1
AAGAAGCTGCGAAGCTTGCCAACGCCCACGGATTCATTCAACAACTCCCAGATAGAATAT
TGGAAAGTGCTGAGAACGATGATAGTGAATTATTTGATGAAGGATCTCAAAATAAATATG
TCGTCAGTGGAAAAGACTTGTTGACAAAATCAGACAATATTTGTAAAATGGATAATGGTG
AGGAAAGTATATCTGAAACAACTGGAAATGTTCCTTATGGAAATTTTTCCCTTATTTCAA
CAATTTCAGTCCTACGTAATCAAAAAAAAGGTATCAAAATTTCCCCAACATTAAGGATTT
TAAAACTTAATAGACCTGAACTACCTCTGATAGTTTTGGGGTGTATTTGCTGTGTGATTA
GTGGGACCACTCAACCAGCTTTTGCGATTCTGTATACTGAAATGTATAGCATTTCTCCTT
TGCGATCTATCCAGATCTGCTGTTTNAGTCGACTACTGTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2171#0      -AAGCTCTGACTGATGTTAGCTACGAAACGTAGAACGCCAATCACCAGCATCATCCCACA 59
consensus_2171#1      AAGAAGCTG--CGAAGCTTGC--CAACGCCCACGGATTCATTCAACAAC----TCCCAGA 52
                       *    ***   ** * * **  * *  *  *      ** *** ** *    ***** *

consensus_2171#0      TACAACAGTAAGCCGACTAAACAGCAGATCTGGATTAGATCGCAAAGGAAAAATGCTATA 119
consensus_2171#1      TAGAATATTGGAAAGTGCTGAGAAC-GATGATAGTGAATTATTTGATGAAGGATCTCAAA 111
                      ** ** * *     *     * * * ***     * *  *     * ***  **   * *

consensus_2171#0      CATTTCAGTATACAGAATCGCAAAAGCTGGTTGAGTGGTCC---CACTAATCACACAGCA 176
consensus_2171#1      -ATAAATATGTCGTCAGTGGAAAAGACTTGTTGACAAAATCAGACAATATTTGTAAAATG 170
                       **     * *    * * * ***  ** *****      *   ** ** *   * *   

consensus_2171#0      AATACACCCCA--AAACTACCTCTGATAGTTTTGGGGTGTATTTGCTGTGTGATTAGTTT 234
consensus_2171#1      GATAATGGTGAGGAAAGTATATCTGAAACAACTGGAA-ATGTTCCTTATGGAAATTTTTC 229
                       ***      *  *** **  ***** *    ***    * **   * **  * *  ** 

consensus_2171#0      GCGAATCTGGGACACACGATGAACTTGTGGCTGAAAAGGGTCTTTATGCTGCGATGCTTA 294
consensus_2171#1      CCTTATTTCAACAATTTCAGTCCTACGTAATCAAAAAAA------AGGTATCAAAATTTC 283
                       *  ** *     *    *       **     ****        * *   * *   ** 

consensus_2171#0      GTAACCAGAGAATATTGGAAAGTGCTGAGAACGATGATAGTGAATTATTTGATGAAGGAT 354
consensus_2171#1      CCC-------AACATTAAGGATTTTAAAACTTAATAGACCTGAACTACCT--CTGATAGT 334
                                ** ***    * *    *     **     **** **  *     *   *

consensus_2171#0      CTCAAAATAAATATGTCGT-CAGTGGAAAAGACTTGTTGACAAAATCAGACAATATTTGT 413
consensus_2171#1      TTTGGGGTGTATTTGCTGTGTGATTAGTGGGACCACTCAACCAGCTTTTGCGAT-TCTGT 393
                       *     *  ** **  **    *      ***   *  ** *  *    * ** * ***

consensus_2171#0      AAAATGGATAATGGTGAGGAAAGTATATCTGAAACAACTGGAAATGCTCCTTATGGAAAT 473
consensus_2171#1      ATACTGAAATGTATAGCATTTCTCCTTTGCGATCTATCCAGATCTGCTGTTTNAGTCGAC 453
                      * * ** *   *   *         * *  **   * *  **  ****  **  *   * 

consensus_2171#0      TTTTCCCTTATTTCAACAATTTCAGTCC 501
consensus_2171#1      TACTGTGA-------------------- 461
                      *  *