cluster # 2198

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Schistosoma mansoni
cluster # 2198 cluster # 2198 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2198#0 length = 541 sequences # 1

consensus_2198#1 length = 469 sequences # 1

consensusID : consensus_2198#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 541
fasta sequence

                              [GGTACCAGGTGAGCACTCGAACTTTAAACTACTGAGTCCAGCAACCGATGGTATACATGTTTTGGTTATAAACAATTCGCGATAAGTCATAACTGTGTGCCATGATCATTAGTTAGTATCTGTCTCATATTGGAAATGGTCGGAGTCCACTAGGTCTCGCGCTTAGCGATTAGATGAGGGTGTCTCAATACACATAACTCAAGACAGTCTAGTTCAGCTTCTTTCCTTGGTTGTTCTCAAATGGATACACCTTCAACCTAAGTACCCAACTCTAGATGCGNTGCTTTACAGATGCTAGAAACTGCGGATCTCTGCAGGCATCGTAGAGAGGTATTGGCTATTAATAGCTGTTACCATGCTAGTGCTCTCGACAAAGTATTGACTTGATGATTCGAACCATTATACAATTGAGTATGGCTTGAAATGTAACCCGAGGTGGTTGCAGATGAACTCTCAACACATGTATAAAAACACTTATCCGGCTTTCGATGAATTGCCCTATTTGTGGCATAATCAAGATATCGGTTCACCTGATAAATAC]

[+] EMBL CD166567             [GGTACCAGGTGAGCACTCGAACTTTAAACTACTGAGTCCAGCAACCGATGGTATACATGTTTTGGTTATAAACAATTCGCGATAAGTCATAACTGTGTGCCATGATCATTAGTTAGTATCTGTCTCATATTGGAAATGGTCGGAGTCCACTAGGTCTCGCGCTTAGCGATTAGATGAGGGTGTCTCAATACACATAACTCAAGACAGTCTAGTTCAGCTTCTTTCCTTGGTTGTTCTCAAATGGATACACCTTCAACCTAAGTACCCAACTCTAGATGCGNTGCTTTACAGATGCTAGAAACTGCGGATCTCTGCAGGCATCGTAGAGAGGTATTGGCTATTAATAGCTGTTACCATGCTAGTGCTCTCGACAAAGTATTGACTTGATGATTCGAACCATTATACAATTGAGTATGGCTTGAAATGTAACCCGAGGTGGTTGCAGATGAACTCTCAACACATGTATAAAAACACTTATCCGGCTTTCGATGAATTGCCCTATTTGTGGCATAATCAAGATATCGGTTCACCTGATAAATAC]




>consensus_2198#0
GGTACCAGGTGAGCACTCGAACTTTAAACTACTGAGTCCAGCAACCGATGGTATACATGT
TTTGGTTATAAACAATTCGCGATAAGTCATAACTGTGTGCCATGATCATTAGTTAGTATC
TGTCTCATATTGGAAATGGTCGGAGTCCACTAGGTCTCGCGCTTAGCGATTAGATGAGGG
TGTCTCAATACACATAACTCAAGACAGTCTAGTTCAGCTTCTTTCCTTGGTTGTTCTCAA
ATGGATACACCTTCAACCTAAGTACCCAACTCTAGATGCGNTGCTTTACAGATGCTAGAA
ACTGCGGATCTCTGCAGGCATCGTAGAGAGGTATTGGCTATTAATAGCTGTTACCATGCT
AGTGCTCTCGACAAAGTATTGACTTGATGATTCGAACCATTATACAATTGAGTATGGCTT
GAAATGTAACCCGAGGTGGTTGCAGATGAACTCTCAACACATGTATAAAAACACTTATCC
GGCTTTCGATGAATTGCCCTATTTGTGGCATAATCAAGATATCGGTTCACCTGATAAATA
C

consensusID : consensus_2198#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 469
fasta sequence

                              [CATTATCATTAGTTAGTAACTGTCTCATATTGGAAATGGTTGGACTCCACTAGTCTCGGCTTTGCATTACTGAGGGGTCTCATACCATAATCAAACAGCTATTCAGTTTTTCTTGGTTTTTAATGGTCACTTAACCAAGACCAATTAGTGGTGTTAAGTGTAAAATCGATTTCAGCTCTAAACTTTGCATTATTCGTTTTATCTGTCTCCAAAATATTACTGATATTGAACATTATCAATTAGTATGCTTGAATGTACTCCAGTTGGTTGCAGATGAACTCTCAACACATGTATAAAAACACTTATCCGGCTTTCGGTGAATTGCCCTATTTGTGGCATAATCAAGATATCGGTTCACCTGATAAATACCTAGTGGTTTCAAACCGTAGTCACTTAGTATCACAGACAGAGATGTTACCACTGATCTCCAGTTTACACTGGTTATTAATAAATGTCACGTATGTTTATT]

[-] EMBL CD166528             [CATTATCATTAGTTAGTAACTGTCTCATATTGGAAATGGTTGGACTCCACTAGTCTCGGCTTTGCATTACTGAGGGGTCTCATACCATAATCAAACAGCTATTCAGTTTTTCTTGGTTTTTAATGGTCACTTAACCAAGACCAATTAGTGGTGTTAAGTGTAAAATCGATTTCAGCTCTAAACTTTGCATTATTCGTTTTATCTGTCTCCAAAATATTACTGATATTGAACATTATCAATTAGTATGCTTGAATGTACTCCAGTTGGTTGCAGATGAACTCTCAACACATGTATAAAAACACTTATCCGGCTTTCGGTGAATTGCCCTATTTGTGGCATAATCAAGATATCGGTTCACCTGATAAATACCTAGTGGTTTCAAACCGTAGTCACTTAGTATCACAGACAGAGATGTTACCACTGATCTCCAGTTTACACTGGTTATTAATAAATGTCACGTATGTTTATT]




>consensus_2198#1
CATTATCATTAGTTAGTAACTGTCTCATATTGGAAATGGTTGGACTCCACTAGTCTCGGC
TTTGCATTACTGAGGGGTCTCATACCATAATCAAACAGCTATTCAGTTTTTCTTGGTTTT
TAATGGTCACTTAACCAAGACCAATTAGTGGTGTTAAGTGTAAAATCGATTTCAGCTCTA
AACTTTGCATTATTCGTTTTATCTGTCTCCAAAATATTACTGATATTGAACATTATCAAT
TAGTATGCTTGAATGTACTCCAGTTGGTTGCAGATGAACTCTCAACACATGTATAAAAAC
ACTTATCCGGCTTTCGGTGAATTGCCCTATTTGTGGCATAATCAAGATATCGGTTCACCT
GATAAATACCTAGTGGTTTCAAACCGTAGTCACTTAGTATCACAGACAGAGATGTTACCA
CTGATCTCCAGTTTACACTGGTTATTAATAAATGTCACGTATGTTTATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2198#0      GGTACCAGGTGAGCACTCGAACTTTAAACTACTGAGTCCAGCAACCGATGGTATACATGT 60
consensus_2198#1      ------------------------------------------------------------
                                                                                  

consensus_2198#0      TTTGGTTATAAACAATTCGCGATAAGTCATAACTGTGTGCCATGATCATTAGTTAGTATC 120
consensus_2198#1      ----------------------------------------CATTATCATTAGTTAGTAAC 20
                                                              *** ************** *

consensus_2198#0      TGTCTCATATTGGAAATGGTCGGAGTCCACTAGGTCTCGCGCTTAGCGATTAGATGAGGG 180
consensus_2198#1      TGTCTCATATTGGAAATGGTTGGACTCCACTAG-TCTCG-GCTTTGC-ATTAC-TGAGGG 76
                      ******************** *** ******** ***** **** ** ****  ******

consensus_2198#0      TGTCTCAATACACATAACTCAAGACAGTCTAGTTCAGCTTCTTTCCTTGGTTGTTCTCAA 240
consensus_2198#1      -GTCTCA-TAC-CATAATC--AAACAGCT--ATTCAGTTTTT---CTTGGTTTTT----A 122
                       ****** *** *****    * ****     ***** ** *   ******* **    *

consensus_2198#0      ATGGATACACCTTCAACCTAAGTACCCAACTCTAGATGCGNTGCTTTACAGATGCTAGAA 300
consensus_2198#1      ATGGTCAC----TTAACCAAGA---CCAATTA-----GTGGTGTT----AAGTG-TAAAA 165
                      ****  **    * **** *     **** *      * * ** *    *  ** ** **

consensus_2198#0      ACTGCGGATCTCTGCAGGCATCGTAGAGAGGTATTGGCTATTAATAGCTGTTACCATGCT 360
consensus_2198#1      TC----GATTTCAGC------TCTAAAC-----TTTGC-ATTATTCGTT-TTATC----- 203
                       *    *** ** **        ** *      ** ** **** * * * *** *     

consensus_2198#0      AGTGCTCTCGACAAAGTATTGACTTGATGATTCGAACCATTATACAATTGAGTATGGCTT 420
consensus_2198#1      -----TGTCTCCAAAATATTA--CTGATA--TTGAAC-ATTAT-CAATT-AGTATG-CTT 250
                           * **  **** ****    ****   * **** ***** ***** ****** ***

consensus_2198#0      GAAATGTAACCCGAGGTGGTTGCAGATGAACTCTCAACACATGTATAAAAACACTTATCC 480
consensus_2198#1      GAA-TGTA-CTCCAGTTGGTTGCAGATGAACTCTCAACACATGTATAAAAACACTTATCC 308
                      *** **** * * ** ********************************************

consensus_2198#0      GGCTTTCGATGAATTGCCCTATTTGTGGCATAATCAAGATATCGGTTCACCTGATAAATA 540
consensus_2198#1      GGCTTTCGGTGAATTGCCCTATTTGTGGCATAATCAAGATATCGGTTCACCTGATAAATA 368
                      ******** ***************************************************

consensus_2198#0      C----------------------------------------------------------- 541
consensus_2198#1      CCTAGTGGTTTCAAACCGTAGTCACTTAGTATCACAGACAGAGATGTTACCACTGATCTC 428
                      *                                                           

consensus_2198#0      -----------------------------------------
consensus_2198#1      CAGTTTACACTGGTTATTAATAAATGTCACGTATGTTTATT 469