cluster # 2212

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Schistosoma mansoni
cluster # 2212 cluster # 2212 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2212#0 length = 465 sequences # 1

consensus_2212#1 length = 444 sequences # 1

consensusID : consensus_2212#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 465
fasta sequence

                              [ATTGGCCCGTAAACGAATGATTACAATTTTAATAGCTCAACAGAAAATACCCGAAGCAATTAATGAATTAAGAGAATATTTAAAAATTTTTATGAGCGATTTTGAAGCGTGGAATGAATTAGCTGACCTTTATTTATCAGAATGTGATTATAAACACGCAGCGTTTTGTATGGAAGAAATGATATTGTCTAATCCTTCTAATCATCTCTATTATCAACGTTATGCTGAGATTAAATACACTGAAGGTGGAACAGAAAATTTAGAATTAGCCAGAGCTTATTATAGTCAAGCTTGTCTATTGTGCCCTAATAACCTTCGTAGTTTATACGGTCTTCTACTTACATGCTCCGCTTTAGATAATCATCTATCAAAATCAATTAAGATGCTTCCGTTAACAACAGAGAATAAACTACACAATGGACCATCTGTCGGAAACACTTACTCAAGTATTGTTTATGATAATCT]

[+] EMBL CD083525             [ATTGGCCCGTAAACGAATGATTACAATTTTAATAGCTCAACAGAAAATACCCGAAGCAATTAATGAATTAAGAGAATATTTAAAAATTTTTATGAGCGATTTTGAAGCGTGGAATGAATTAGCTGACCTTTATTTATCAGAATGTGATTATAAACACGCAGCGTTTTGTATGGAAGAAATGATATTGTCTAATCCTTCTAATCATCTCTATTATCAACGTTATGCTGAGATTAAATACACTGAAGGTGGAACAGAAAATTTAGAATTAGCCAGAGCTTATTATAGTCAAGCTTGTCTATTGTGCCCTAATAACCTTCGTAGTTTATACGGTCTTCTACTTACATGCTCCGCTTTAGATAATCATCTATCAAAATCAATTAAGATGCTTCCGTTAACAACAGAGAATAAACTACACAATGGACCATCTGTCGGAAACACTTACTCAAGTATTGTTTATGATAATCT]




>consensus_2212#0
ATTGGCCCGTAAACGAATGATTACAATTTTAATAGCTCAACAGAAAATACCCGAAGCAAT
TAATGAATTAAGAGAATATTTAAAAATTTTTATGAGCGATTTTGAAGCGTGGAATGAATT
AGCTGACCTTTATTTATCAGAATGTGATTATAAACACGCAGCGTTTTGTATGGAAGAAAT
GATATTGTCTAATCCTTCTAATCATCTCTATTATCAACGTTATGCTGAGATTAAATACAC
TGAAGGTGGAACAGAAAATTTAGAATTAGCCAGAGCTTATTATAGTCAAGCTTGTCTATT
GTGCCCTAATAACCTTCGTAGTTTATACGGTCTTCTACTTACATGCTCCGCTTTAGATAA
TCATCTATCAAAATCAATTAAGATGCTTCCGTTAACAACAGAGAATAAACTACACAATGG
ACCATCTGTCGGAAACACTTACTCAAGTATTGTTTATGATAATCT

consensusID : consensus_2212#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 444
fasta sequence

                              [AGCTATTAAAATTGTAATCATTCGTTTACGGGCCAATGTATTGGTTGGATCATCTTTTATGAGTTTTGAGTACACATTTTGAGCATCTTCGAAGTTTCCTTTACTTTCTAAGTACATACCAAAAAGACGATTAACACGACAACTATTACGAAATTATGCCAAAAGACGATCAAGACATTCGCAAGCTAAATCATCATCTCCCATATCTAGAGCGGCGATGAACACCTGTTCCAAAATCGAGTACTATTTTTAAATATTCTCTTAATTCATTAATTGCTTCGGGTATTTTCTGTTGAGCTATTAAAATTGTAATCATTCGTTTACGGGCCAATGTATTGGTTGGATCATCTTTTATGAGTTTTGAGTACACATTTTGAGCATCTTCGAAGTTTCCTTTACTTTCTAAGTACATACCAAAAAGACGATTAACACGACAACTATTAC]

[+] EMBL CD096925             [AGCTATTAAAATTGTAATCATTCGTTTACGGGCCAATGTATTGGTTGGATCATCTTTTATGAGTTTTGAGTACACATTTTGAGCATCTTCGAAGTTTCCTTTACTTTCTAAGTACATACCAAAAAGACGATTAACACGACAACTATTACGAAATTATGCCAAAAGACGATCAAGACATTCGCAAGCTAAATCATCATCTCCCATATCTAGAGCGGCGATGAACACCTGTTCCAAAATCGAGTACTATTTTTAAATATTCTCTTAATTCATTAATTGCTTCGGGTATTTTCTGTTGAGCTATTAAAATTGTAATCATTCGTTTACGGGCCAATGTATTGGTTGGATCATCTTTTATGAGTTTTGAGTACACATTTTGAGCATCTTCGAAGTTTCCTTTACTTTCTAAGTACATACCAAAAAGACGATTAACACGACAACTATTAC]




>consensus_2212#1
AGCTATTAAAATTGTAATCATTCGTTTACGGGCCAATGTATTGGTTGGATCATCTTTTAT
GAGTTTTGAGTACACATTTTGAGCATCTTCGAAGTTTCCTTTACTTTCTAAGTACATACC
AAAAAGACGATTAACACGACAACTATTACGAAATTATGCCAAAAGACGATCAAGACATTC
GCAAGCTAAATCATCATCTCCCATATCTAGAGCGGCGATGAACACCTGTTCCAAAATCGA
GTACTATTTTTAAATATTCTCTTAATTCATTAATTGCTTCGGGTATTTTCTGTTGAGCTA
TTAAAATTGTAATCATTCGTTTACGGGCCAATGTATTGGTTGGATCATCTTTTATGAGTT
TTGAGTACACATTTTGAGCATCTTCGAAGTTTCCTTTACTTTCTAAGTACATACCAAAAA
GACGATTAACACGACAACTATTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2212#0      ATTGGCCCGTAAACGAATGATTACAATTTTAATAGCTCAACAGAAAATACCCGAAGCAAT 60
consensus_2212#1      ---AGCTATTAAAATTGTAATCATTCGTTTACGGGC-CAATGTATTGGTTGGATCATCTT 56
                          **   ****    * ** *    ****   ** ***   *               *

consensus_2212#0      TAATGAATTAAGAGAATA--TTTAAAAATTTTTATGAGCGATTTTGAAGCGTGGAATGAA 118
consensus_2212#1      TTATGAGTTTTGAGTACACATTTTGAGCATCTTCGAAGTTTCCTTTACTTTCTAAGTACA 116
                      * **** **  *** * *  ***  *   * **   **     ** *       * *  *

consensus_2212#0      TTAGCTGACCTTTATTTATCAGAATGTGATTATAAACACGCAGCGTTTTGTATGGAAGAA 178
consensus_2212#1      TACCAAAAAGACGATTAACACGACAACTATTACGAA-----ATTATGCCAAAAGACGATC 171
                      *      *     *** *   **     ****  **     *   *     * *      

consensus_2212#0      ATGATATTGTCTAATCCTTCTAATCATCTCTATTATCAACGTTATGCTGAGATTAAATAC 238
consensus_2212#1      AAGACATT-CGCAAGCTAAATCATCATCTCCCATATCTAGAGCG-GCGATGAACACCTGT 229
                      * ** ***    ** *    * ********   **** *      **   **  *  *  

consensus_2212#0      ACTGAAGGTGGAACAGAAAATTTAGAATTAGCCAGAGCTTATTA--TAGTCAAGCTTGTC 296
consensus_2212#1      TCC-AAAATCGAGTACTATTTTTAAATATTCTCTTAATTCATTAATTGCTTCGGGTATTT 288
                       *  **  * **  *  *  **** *  *   *  *  * ****  *  *   * *  * 

consensus_2212#0      TATTGTGCCCTAATAACCTTCGTAGTTTATACGGTCTTCTACTTACATGCTCCGCTTTAG 356
consensus_2212#1      TCTGTTGAGCTATTAAAATT-GTAATC-ATTCGTTTACGGGCCAATGTATTG---GTTGG 343
                      * *  **  *** ***  ** *** *  ** ** *      *  *  *  *     ** *

consensus_2212#0      ATAATCATCTATCAAAATCAATTAAGATGCTTCCGTTAACAACAGAGAATAAACTACACA 416
consensus_2212#1      ATCATCTTTTATGAGTTTTGAGTAC-ACATTTTGAGCATCTTCGAAGTTTCCTTTACTTT 402
                      ** *** * *** *   *  * **  *   **     * *  *  **  *    ***   

consensus_2212#0      ATGGACCATCTGTCGGAAACACTTACTCAAGTATTGTTTATGATAATCT 465
consensus_2212#1      CTA-AGTACATACCAAAAAGACG-ATTAACACGACAACTATTAC----- 444
                       *  *  *  *  *  *** **  * * *         *** *