cluster # 2219

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Schistosoma mansoni
cluster # 2219 cluster # 2219 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2219#0 length = 478 sequences # 1

consensus_2219#1 length = 461 sequences # 1

consensusID : consensus_2219#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 478
fasta sequence

                              [AGAATATTGTGATTTATAATTTCTAGATGCTCGATCTGTTGATGGTGTCTATTAAGTGACTCCTGCAGAACGTGCAGCTATTGGAGATCAAGAAATGTCATTTCTTTTACCACGTTCACATCATACATCTACTACTACTACTACTACTACTACTACTACAGATTATTCCGATCGTATTAGAGGACGAAGATCGTTTAATCTTACTAACCGGTCAAATTATACGGAGAATTATTTAGAACGAGATGATACTAGAAGTTGTTTTTCGAATTGGTCCAATGCTTCTGCTTCCCAATCTAAATTTAAACGATCCTCTTCTTCAGCATCTCTTGATTATGGAGCAGAGGATGACACCGACTCAAATCTTTTACCACTTACACCTCCATCGAATAATCACCATCTTCGTAGTACTACTTCTAGTTGTAATAATAATAATAATAATAATAGTAGTAGTACTAATAATAGTAACCAATGGTAAGGT]

[+] EMBL CD083703             [AGAATATTGTGATTTATAATTTCTAGATGCTCGATCTGTTGATGGTGTCTATTAAGTGACTCCTGCAGAACGTGCAGCTATTGGAGATCAAGAAATGTCATTTCTTTTACCACGTTCACATCATACATCTACTACTACTACTACTACTACTACTACTACAGATTATTCCGATCGTATTAGAGGACGAAGATCGTTTAATCTTACTAACCGGTCAAATTATACGGAGAATTATTTAGAACGAGATGATACTAGAAGTTGTTTTTCGAATTGGTCCAATGCTTCTGCTTCCCAATCTAAATTTAAACGATCCTCTTCTTCAGCATCTCTTGATTATGGAGCAGAGGATGACACCGACTCAAATCTTTTACCACTTACACCTCCATCGAATAATCACCATCTTCGTAGTACTACTTCTAGTTGTAATAATAATAATAATAATAATAGTAGTAGTACTAATAATAGTAACCAATGGTAAGGT]




>consensus_2219#0
AGAATATTGTGATTTATAATTTCTAGATGCTCGATCTGTTGATGGTGTCTATTAAGTGAC
TCCTGCAGAACGTGCAGCTATTGGAGATCAAGAAATGTCATTTCTTTTACCACGTTCACA
TCATACATCTACTACTACTACTACTACTACTACTACTACAGATTATTCCGATCGTATTAG
AGGACGAAGATCGTTTAATCTTACTAACCGGTCAAATTATACGGAGAATTATTTAGAACG
AGATGATACTAGAAGTTGTTTTTCGAATTGGTCCAATGCTTCTGCTTCCCAATCTAAATT
TAAACGATCCTCTTCTTCAGCATCTCTTGATTATGGAGCAGAGGATGACACCGACTCAAA
TCTTTTACCACTTACACCTCCATCGAATAATCACCATCTTCGTAGTACTACTTCTAGTTG
TAATAATAATAATAATAATAATAGTAGTAGTACTAATAATAGTAACCAATGGTAAGGT

consensusID : consensus_2219#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 461
fasta sequence

                              [TAATTGAAAAAGAATTTGTTCGTGCCGGTCTCCCAGTTCCTGAAAGACCTAAATGTCCTTATATATTAGATACTTATCGAAAAATGGTTCAACTTGTCGATAATTTACTACGTCATGATAAACTTGCTCGATCTGTTGATGGTGTCTATGAAGTGACTCCTGCAGAACGTGCAGCTATTGGAGATCAAGAAATGTCATTTCTTCTACCACGTTCACATCATACATCTACTACTACTACTACTACTACTACTACTACAGATTATTCCGATCGTATTAGAGGACGAAGATCGTTTAATCTTACTAACCGGTCAAATTATACGGAGAATTATTTAGAACGAGATGATACTAGAAGTTGTTTTTCGAATTGGTCCAATGCTTCTGCATCCCAATCTAAATTTAAACGATCCTCTTCTTCAGCATCTCTTGATTATGGAGCAGAGGATGACACCGACTCAAATCTT]

[-] EMBL CD147028             [TAATTGAAAAAGAATTTGTTCGTGCCGGTCTCCCAGTTCCTGAAAGACCTAAATGTCCTTATATATTAGATACTTATCGAAAAATGGTTCAACTTGTCGATAATTTACTACGTCATGATAAACTTGCTCGATCTGTTGATGGTGTCTATGAAGTGACTCCTGCAGAACGTGCAGCTATTGGAGATCAAGAAATGTCATTTCTTCTACCACGTTCACATCATACATCTACTACTACTACTACTACTACTACTACTACAGATTATTCCGATCGTATTAGAGGACGAAGATCGTTTAATCTTACTAACCGGTCAAATTATACGGAGAATTATTTAGAACGAGATGATACTAGAAGTTGTTTTTCGAATTGGTCCAATGCTTCTGCATCCCAATCTAAATTTAAACGATCCTCTTCTTCAGCATCTCTTGATTATGGAGCAGAGGATGACACCGACTCAAATCTT]




>consensus_2219#1
TAATTGAAAAAGAATTTGTTCGTGCCGGTCTCCCAGTTCCTGAAAGACCTAAATGTCCTT
ATATATTAGATACTTATCGAAAAATGGTTCAACTTGTCGATAATTTACTACGTCATGATA
AACTTGCTCGATCTGTTGATGGTGTCTATGAAGTGACTCCTGCAGAACGTGCAGCTATTG
GAGATCAAGAAATGTCATTTCTTCTACCACGTTCACATCATACATCTACTACTACTACTA
CTACTACTACTACTACAGATTATTCCGATCGTATTAGAGGACGAAGATCGTTTAATCTTA
CTAACCGGTCAAATTATACGGAGAATTATTTAGAACGAGATGATACTAGAAGTTGTTTTT
CGAATTGGTCCAATGCTTCTGCATCCCAATCTAAATTTAAACGATCCTCTTCTTCAGCAT
CTCTTGATTATGGAGCAGAGGATGACACCGACTCAAATCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2219#0      ------------------------------------------------------------
consensus_2219#1      TAATTGAAAAAGAATTTGTTCGTGCCGGTCTCCCAGTTCCTGAAAGACCTAAATGTCCTT 60
                                                                                  

consensus_2219#0      ------------------------------AGAATATTG-TGATTTATAATTTCTAGAT- 28
consensus_2219#1      ATATATTAGATACTTATCGAAAAATGGTTCAACTTGTCGATAATTTACTACGTCATGATA 120
                                                    *   * * * * *****  *  **  *** 

consensus_2219#0      -----GCTCGATCTGTTGATGGTGTCTATTAAGTGACTCCTGCAGAACGTGCAGCTATTG 83
consensus_2219#1      AACTTGCTCGATCTGTTGATGGTGTCTATGAAGTGACTCCTGCAGAACGTGCAGCTATTG 180
                           ************************ ******************************

consensus_2219#0      GAGATCAAGAAATGTCATTTCTTTTACCACGTTCACATCATACATCTACTACTACTACTA 143
consensus_2219#1      GAGATCAAGAAATGTCATTTCTTCTACCACGTTCACATCATACATCTACTACTACTACTA 240
                      *********************** ************************************

consensus_2219#0      CTACTACTACTACTACAGATTATTCCGATCGTATTAGAGGACGAAGATCGTTTAATCTTA 203
consensus_2219#1      CTACTACTACTACTACAGATTATTCCGATCGTATTAGAGGACGAAGATCGTTTAATCTTA 300
                      ************************************************************

consensus_2219#0      CTAACCGGTCAAATTATACGGAGAATTATTTAGAACGAGATGATACTAGAAGTTGTTTTT 263
consensus_2219#1      CTAACCGGTCAAATTATACGGAGAATTATTTAGAACGAGATGATACTAGAAGTTGTTTTT 360
                      ************************************************************

consensus_2219#0      CGAATTGGTCCAATGCTTCTGCTTCCCAATCTAAATTTAAACGATCCTCTTCTTCAGCAT 323
consensus_2219#1      CGAATTGGTCCAATGCTTCTGCATCCCAATCTAAATTTAAACGATCCTCTTCTTCAGCAT 420
                      ********************** *************************************

consensus_2219#0      CTCTTGATTATGGAGCAGAGGATGACACCGACTCAAATCTTTTACCACTTACACCTCCAT 383
consensus_2219#1      CTCTTGATTATGGAGCAGAGGATGACACCGACTCAAATCTT------------------- 461
                      *****************************************                   

consensus_2219#0      CGAATAATCACCATCTTCGTAGTACTACTTCTAGTTGTAATAATAATAATAATAATAATA 443
consensus_2219#1      ------------------------------------------------------------
                                                                                  

consensus_2219#0      GTAGTAGTACTAATAATAGTAACCAATGGTAAGGT 478
consensus_2219#1      -----------------------------------