cluster # 2329

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Schistosoma mansoni
cluster # 2329 cluster # 2329 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2329#0 length = 205 sequences # 1

consensus_2329#1 length = 178 sequences # 1

consensusID : consensus_2329#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 205
fasta sequence

                              [GTGAGTCCACCACCTCCCTGGGCAGCCTGTGCTAACGCCTCACCACTGGTTCTGACAAAAATTATTCCTGATCTCCAACATGAATCTTTGGAGTTACGAAAGCTTTCGACTGCTATTTTTTTTCAGAATTGACCTAATGGTGATCTATATCAGAGTTGGCAGAGAGGGTTTTTTGATTATGTTTTTGAGGGAAATTGATGATTTA]

[+] EMBL CD085338             [GTGAGTCCACCACCTCCCTGGGCAGCCTGTGCTAACGCCTCACCACTGGTTCTGACAAAAATTATTCCTGATCTCCAACATGAATCTTTGGAGTTACGAAAGCTTTCGACTGCTATTTTTTTTCAGAATTGACCTAATGGTGATCTATATCAGAGTTGGCAGAGAGGGTTTTTTGATTATGTTTTTGAGGGAAATTGATGATTTA]




>consensus_2329#0
GTGAGTCCACCACCTCCCTGGGCAGCCTGTGCTAACGCCTCACCACTGGTTCTGACAAAA
ATTATTCCTGATCTCCAACATGAATCTTTGGAGTTACGAAAGCTTTCGACTGCTATTTTT
TTTCAGAATTGACCTAATGGTGATCTATATCAGAGTTGGCAGAGAGGGTTTTTTGATTAT
GTTTTTGAGGGAAATTGATGATTTA

consensusID : consensus_2329#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 178
fasta sequence

                              [AGCCTTGGTTTGGATTTTTTGTTGCAAAATGGGAACAGGCTGCAATATGGGAACCCATATTTAATACAGAAACATGAATTGAGAGGAATTGTTTTACAGTATTGACCTAATGTTGATCTATATCAGAGTTGGCAGAGAGGGTTTTTTGATTAGTTTTTTGAGGGAAATTGATGATTTA]

[+] EMBL CD085334             [AGCCTTGGTTTGGATTTTTTGTTGCAAAATGGGAACAGGCTGCAATATGGGAACCCATATTTAATACAGAAACATGAATTGAGAGGAATTGTTTTACAGTATTGACCTAATGTTGATCTATATCAGAGTTGGCAGAGAGGGTTTTTTGATTAGTTTTTTGAGGGAAATTGATGATTTA]




>consensus_2329#1
AGCCTTGGTTTGGATTTTTTGTTGCAAAATGGGAACAGGCTGCAATATGGGAACCCATAT
TTAATACAGAAACATGAATTGAGAGGAATTGTTTTACAGTATTGACCTAATGTTGATCTA
TATCAGAGTTGGCAGAGAGGGTTTTTTGATTAGTTTTTTGAGGGAAATTGATGATTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2329#0      GTGAGTCCACCACCTCCCTGGGCAGCCTGTGCTAACGCCTCACCACTGGTTCTGACAAAA 60
consensus_2329#1      -----------------------AGCCTTGGTTTGGATTTT----TTGTTGCAAAATGGG 33
                                             *****  * *      *      ** * *  *     

consensus_2329#0      ATTATTCCTGATCTCCAACATGAATCTTTGGAGTTACGAAAGCTTTCGACTGCTATTTTT 120
consensus_2329#1      AACAGGCTGCAATATGGGAACCCATATTTAATACAGAAACATGAATTGAGAGGAATTGTT 93
                      *  *  *   *        *   ** ***         * *    * **  *  *** **

consensus_2329#0      TTTCAGAATTGACCTAATGGTGATCTATATCAGAGTTGGCAGAGAGGGTTTTTTGATTAT 180
consensus_2329#1      TTACAGTATTGACCTAATGTTGATCTATATCAGAGTTGGCAGAGAGGGTTTTTTGATTAG 153
                      ** *** ************ *************************************** 

consensus_2329#0      GTTTTTGAGGGAAATTGATGATTTA 205
consensus_2329#1      TTTTTTGAGGGAAATTGATGATTTA 178
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