cluster # 233

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Schistosoma mansoni
cluster # 233 cluster # 233 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_233#0 length = 475 sequences # 1

consensus_233#1 length = 345 sequences # 1

consensusID : consensus_233#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 475
fasta sequence

                              [CATTGAATGTACTTCAGTAGAAGATCGATAACGAAAGAATGGAGACGAAACGCGATTGGTATGAAAATTCATGAACAATTATAATCGGAGACTATGAGCGGATACTTATAGAAGGAACAATCAAGATTGAAACAATTGATTGATAGTTTGCAAATTAACTGTTCACTATATGGTTCTCATATTTTAATGAGATATTCTGTAATGTTGTGCTAAAATACATTCGATTGTCCCCACTCGTGTTCTTGTTTACTTTATTGCTACTACAATAGAAACCAATCATTTTATAAACAGAAAAGTATTATGTGTATTTATCATTATTTTGCTTGAGAAGCTGATCGGACTGGTGTATAGCAAGATTACATAGACTCTGTAGGACTAATCACTAGCTATACAATTTAATTGTAACACCTTTATATACTATTGAACGTTCGTTCAGATATTAGAAGGACTAGGTTCTTTGAGTTAGCATAGGTAA]

[+] EMBL CD112386             [CATTGAATGTACTTCAGTAGAAGATCGATAACGAAAGAATGGAGACGAAACGCGATTGGTATGAAAATTCATGAACAATTATAATCGGAGACTATGAGCGGATACTTATAGAAGGAACAATCAAGATTGAAACAATTGATTGATAGTTTGCAAATTAACTGTTCACTATATGGTTCTCATATTTTAATGAGATATTCTGTAATGTTGTGCTAAAATACATTCGATTGTCCCCACTCGTGTTCTTGTTTACTTTATTGCTACTACAATAGAAACCAATCATTTTATAAACAGAAAAGTATTATGTGTATTTATCATTATTTTGCTTGAGAAGCTGATCGGACTGGTGTATAGCAAGATTACATAGACTCTGTAGGACTAATCACTAGCTATACAATTTAATTGTAACACCTTTATATACTATTGAACGTTCGTTCAGATATTAGAAGGACTAGGTTCTTTGAGTTAGCATAGGTAA]




>consensus_233#0
CATTGAATGTACTTCAGTAGAAGATCGATAACGAAAGAATGGAGACGAAACGCGATTGGT
ATGAAAATTCATGAACAATTATAATCGGAGACTATGAGCGGATACTTATAGAAGGAACAA
TCAAGATTGAAACAATTGATTGATAGTTTGCAAATTAACTGTTCACTATATGGTTCTCAT
ATTTTAATGAGATATTCTGTAATGTTGTGCTAAAATACATTCGATTGTCCCCACTCGTGT
TCTTGTTTACTTTATTGCTACTACAATAGAAACCAATCATTTTATAAACAGAAAAGTATT
ATGTGTATTTATCATTATTTTGCTTGAGAAGCTGATCGGACTGGTGTATAGCAAGATTAC
ATAGACTCTGTAGGACTAATCACTAGCTATACAATTTAATTGTAACACCTTTATATACTA
TTGAACGTTCGTTCAGATATTAGAAGGACTAGGTTCTTTGAGTTAGCATAGGTAA

consensusID : consensus_233#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 345
fasta sequence

                              [TTTCAGATCATCCATTTTATTGTGACAAAATCCACTTTGACTGAATATACAAGCTAGGATATGATTTAATCACAGTCGCGAATAGTTAAAACGGTCCTTTCCTATTTCACCCATGTATGGAACGTCACACAGAAAGATGCTTCTGACTAGCATATCAATCATCTGATTTCAATTTGAACGTTTTCGTCGTGAGCGGTTTTATATACAGATAATCTCATCAAGGAGGAGGGTTGGGCATGGGGTTAGCGACCCCATTCCTCTTCCTTCTAGTGATTGACTGGATTATGAAGAATTTGACATCTGACGGGAAATACGGAATGCAATGGACGTCTCAGAATCAATTAG]

[+] EMBL CD122228             [TTTCAGATCATCCATTTTATTGTGACAAAATCCACTTTGACTGAATATACAAGCTAGGATATGATTTAATCACAGTCGCGAATAGTTAAAACGGTCCTTTCCTATTTCACCCATGTATGGAACGTCACACAGAAAGATGCTTCTGACTAGCATATCAATCATCTGATTTCAATTTGAACGTTTTCGTCGTGAGCGGTTTTATATACAGATAATCTCATCAAGGAGGAGGGTTGGGCATGGGGTTAGCGACCCCATTCCTCTTCCTTCTAGTGATTGACTGGATTATGAAGAATTTGACATCTGACGGGAAATACGGAATGCAATGGACGTCTCAGAATCAATTAG]




>consensus_233#1
TTTCAGATCATCCATTTTATTGTGACAAAATCCACTTTGACTGAATATACAAGCTAGGAT
ATGATTTAATCACAGTCGCGAATAGTTAAAACGGTCCTTTCCTATTTCACCCATGTATGG
AACGTCACACAGAAAGATGCTTCTGACTAGCATATCAATCATCTGATTTCAATTTGAACG
TTTTCGTCGTGAGCGGTTTTATATACAGATAATCTCATCAAGGAGGAGGGTTGGGCATGG
GGTTAGCGACCCCATTCCTCTTCCTTCTAGTGATTGACTGGATTATGAAGAATTTGACAT
CTGACGGGAAATACGGAATGCAATGGACGTCTCAGAATCAATTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_233#0      CATTGAATGTACTTCAGTAGAAGATCGATAACGAAAGAATGGAGACGAAACGCGATTGGT 60
consensus_233#1      ------------------------------------------------------------
                                                                                 

consensus_233#0      ATGAAAATTCATGAACAATTATAATCGGAGACTATGAGCGGATACTTATAGAAGGAACAA 120
consensus_233#1      -------TTTCAGATCATCCATTTT-----ATTGTGACAAAATCCACTTTGACTGAATAT 48
                            **   ** **   **  *     * * ***    ** *   * **  *** * 

consensus_233#0      TCAAGATTGAA-ACAATTGATTGATAGTTTGCAAATTAACTGTTCACTATATGGTTCTCA 179
consensus_233#1      ACAAGCTAGGATATGATTTAATCACAGTC-GCGAATAG-----TTAAAACGGTCCTTTCC 102
                      **** * * * *  *** * * * ***  ** ***       * *  *      * ** 

consensus_233#0      TATTTTAATGAGATATTCTGTAATGTTGTGCTAAAATACATTCGATTGTCCCCACTCGTG 239
consensus_233#1      TATTTCACCCATGTAT---GGAACGTCACACAGAAA-------GATGCTTCTGACTAGCA 152
                     ***** *   *  ***   * ** **    *  ***       ***  * *  *** *  

consensus_233#0      TTCTTGTTTACTTTATTGCTACTACAATAGAAACCAATCATTTTATAAACAGAAAAGTAT 299
consensus_233#1      TA-TCAATCATCTGATTTCAATTTGAA-------CGTTTTCGTCGTGAGCGG-----TTT 199
                     *  *   * *  * *** * * *  **       *  *    *  * * * *     * *

consensus_233#0      TATGTGTATTTATCATTATTTTGCTTGAGAAGCTGATCGGACTGGTGTATAGCAAGATTA 359
consensus_233#1      TATATACAGATA-----ATCTCATCAAGGAGGAGGGTTGGGCATGGGGTTAGCGACCCCA 254
                     *** *  *  **     ** *       ** *  * * ** *  * *  **** *    *

consensus_233#0      CATAGACTCTGTAGGACTAATCACTAGCTATACAATTTA-ATTGTAACACCTT-TATATA 417
consensus_233#1      TTCCTCTTCCTT----CTAGTGATTGACTGGATTATGAAGAATTTGACATCTGACGGGAA 310
                            **  *    *** * * *  **  *  **  * * * * *** **       *

consensus_233#0      CTATTGAACGTTCGTTCAGATATTAGAAGGACTAGGTTCTTTGAGTTAGCATAGGTAA 475
consensus_233#1      ATACGGAATGCA-ATGGACGTCTCAGAATCAATTAG---------------------- 345
                      **  *** *    *  *  * * ****  * *  *