cluster # 239

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Schistosoma mansoni
cluster # 239 cluster # 239 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_239#0 length = 507 sequences # 1

consensus_239#1 length = 127 sequences # 1

consensusID : consensus_239#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 507
fasta sequence

                              [GTGAAAGAAGAATATAGAAGAGATGAGCCTTAACTTAATATTCTTGTTGTAAAACAAAAACTAAAAGATATTTCATTAATCATCTAGTCAGCGGAATATGAAAAATCAAAGTAAATATGAATTCTATCCATATAGCATTTAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGTGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTAT]

[+] EMBL CD123964             [GTGAAAGAAGAATATAGAAGAGATGAGCCTTAACTTAATATTCTTGTTGTAAAACAAAAACTAAAAGATATTTCATTAATCATCTAGTCAGCGGAATATGAAAAATCAAAGTAAATATGAATTCTATCCATATAGCATTTAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGTGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTAT]




>consensus_239#0
GTGAAAGAAGAATATAGAAGAGATGAGCCTTAACTTAATATTCTTGTTGTAAAACAAAAA
CTAAAAGATATTTCATTAATCATCTAGTCAGCGGAATATGAAAAATCAAAGTAAATATGA
ATTCTATCCATATAGCATTTAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAG
TGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGT
GGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGTGAGCGAGTGTATTTTTGAATT
GGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGA
GTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAG
TGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAAT
TGGAGTGTACTGACTAGACGGGAGTAT

consensusID : consensus_239#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 127
fasta sequence

                              [AACTACACCTGTTCACAGTCCACTCTGTCCATCGCCAAACCAACACCACCGTCTAGTGCAGTACACTCCAATTGAAAAATACACTGGCTCGCTCACATCTGTCGATACAACTACACCTGTTCACAGT]

[+] EMBL CD089873             [AACTACACCTGTTCACAGTCCACTCTGTCCATCGCCAAACCAACACCACCGTCTAGTGCAGTACACTCCAATTGAAAAATACACTGGCTCGCTCACATCTGTCGATACAACTACACCTGTTCACAGT]




>consensus_239#1
AACTACACCTGTTCACAGTCCACTCTGTCCATCGCCAAACCAACACCACCGTCTAGTGCA
GTACACTCCAATTGAAAAATACACTGGCTCGCTCACATCTGTCGATACAACTACACCTGT
TCACAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_239#0      GTGAAAGAAGAATATAGAAGAGATGAGCCTTAACTTAATATTCTTGTTGTAAAACAAAAA 60
consensus_239#1      ---------------AACTACACCTGTTCACAGTCCACTCTGTCCATCGCCAAACCAACA 45
                                    *            *  *    * * *     * *  **** ** *

consensus_239#0      CTAAAAGATATTTCATTAATCATCTAGTCAGCGGAATATGAAAAATCAAAGTAAATATGA 120
consensus_239#1      CCACCGTCTAGTGCAGTACAC-TCCAATT-GAAAAATACACTGGCTCGCT-CACATCTG- 101
                     * *     ** * ** **  * ** * *  *   ****       **     * ** ** 

consensus_239#0      ATTCTATCCATATAGCATTTAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAG 180
consensus_239#1      --TCGATACAACTACACCTGTTCACAGT-------------------------------- 127
                       ** ** **  **    *    * ***                                

consensus_239#0      TGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGT 240
consensus_239#1      ------------------------------------------------------------
                                                                                 

consensus_239#0      GGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGTGAGCGAGTGTATTTTTGAATT 300
consensus_239#1      ------------------------------------------------------------
                                                                                 

consensus_239#0      GGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGA 360
consensus_239#1      ------------------------------------------------------------
                                                                                 

consensus_239#0      GTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAG 420
consensus_239#1      ------------------------------------------------------------
                                                                                 

consensus_239#0      TGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAAT 480
consensus_239#1      ------------------------------------------------------------
                                                                                 

consensus_239#0      TGGAGTGTACTGACTAGACGGGAGTAT 507
consensus_239#1      ---------------------------