cluster # 2451

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Schistosoma mansoni
cluster # 2451 cluster # 2451 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2451#0 length = 535 sequences # 1

consensus_2451#1 length = 259 sequences # 1

consensusID : consensus_2451#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 535
fasta sequence

                              [GCTCACGGAACTTGCTTCAACGAACTTGGACAATTTAAACACATTCAAATGTCCTCTGGATCTACTTGATCAAGAAGTGAAGTTGTATGAGTGATTTGATCACTTTCTTGAATTACATCAAGTTCTGGCAAGACAAGTTGGATGATCTTTCCATCCATCACGACGAATCTGGAACATAACTTCTAACATATAAGAAATACGTTTATCACATTGGCCTTCATTTAAGATACGTCGAAGATGTTCAAAGATTCCATGTACACCTTTTGGTACAAGACGTGAAAGCATTGCACCACATTCTTTAAGAACAGATACTGCCACTTCTACACTGTCATCGGTTGTTTGCTCTAGTAGTAACGTCAATAGTTCCAGGATTATTAATTCATGAACGACTTTTGGGTTGACCAAATGAGCTAGAAATCGTGCGGTGGACAAACATCGATCTTTCTGATTACGTCGAAATGCTTTACGGAATTCATTGATTAATCGTTTAAGAACCAGTTCTCCAACCTTGGGAAATTTCGAATTTACAACAGCA]

[+] EMBL CD065594             [GCTCACGGAACTTGCTTCAACGAACTTGGACAATTTAAACACATTCAAATGTCCTCTGGATCTACTTGATCAAGAAGTGAAGTTGTATGAGTGATTTGATCACTTTCTTGAATTACATCAAGTTCTGGCAAGACAAGTTGGATGATCTTTCCATCCATCACGACGAATCTGGAACATAACTTCTAACATATAAGAAATACGTTTATCACATTGGCCTTCATTTAAGATACGTCGAAGATGTTCAAAGATTCCATGTACACCTTTTGGTACAAGACGTGAAAGCATTGCACCACATTCTTTAAGAACAGATACTGCCACTTCTACACTGTCATCGGTTGTTTGCTCTAGTAGTAACGTCAATAGTTCCAGGATTATTAATTCATGAACGACTTTTGGGTTGACCAAATGAGCTAGAAATCGTGCGGTGGACAAACATCGATCTTTCTGATTACGTCGAAATGCTTTACGGAATTCATTGATTAATCGTTTAAGAACCAGTTCTCCAACCTTGGGAAATTTCGAATTTACAACAGCA]




>consensus_2451#0
GCTCACGGAACTTGCTTCAACGAACTTGGACAATTTAAACACATTCAAATGTCCTCTGGA
TCTACTTGATCAAGAAGTGAAGTTGTATGAGTGATTTGATCACTTTCTTGAATTACATCA
AGTTCTGGCAAGACAAGTTGGATGATCTTTCCATCCATCACGACGAATCTGGAACATAAC
TTCTAACATATAAGAAATACGTTTATCACATTGGCCTTCATTTAAGATACGTCGAAGATG
TTCAAAGATTCCATGTACACCTTTTGGTACAAGACGTGAAAGCATTGCACCACATTCTTT
AAGAACAGATACTGCCACTTCTACACTGTCATCGGTTGTTTGCTCTAGTAGTAACGTCAA
TAGTTCCAGGATTATTAATTCATGAACGACTTTTGGGTTGACCAAATGAGCTAGAAATCG
TGCGGTGGACAAACATCGATCTTTCTGATTACGTCGAAATGCTTTACGGAATTCATTGAT
TAATCGTTTAAGAACCAGTTCTCCAACCTTGGGAAATTTCGAATTTACAACAGCA

consensusID : consensus_2451#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 259
fasta sequence

                              [CAACTTCACTTCTTGATCAAGTAGATCCAGAGGAACATTTGAATGTGTTTAAATTCGATCCAGAGTTCTTGGCAAATGAAGCAAAATATGCTGAAATTAGAGAAGCATTATTTGAATCGAATGAAGATTCAGAAGCTGAGTCAGATGGTGAAAATGAAGGTGAAGATTCAGACGAATCAGGTAATGAAGATGATAACGATGATGAAGAGGATGAAGAACATAAACGTAGTGCCGCTGCAACTGCAGAGAATCAACAAAC]

[+] EMBL CD148469             [CAACTTCACTTCTTGATCAAGTAGATCCAGAGGAACATTTGAATGTGTTTAAATTCGATCCAGAGTTCTTGGCAAATGAAGCAAAATATGCTGAAATTAGAGAAGCATTATTTGAATCGAATGAAGATTCAGAAGCTGAGTCAGATGGTGAAAATGAAGGTGAAGATTCAGACGAATCAGGTAATGAAGATGATAACGATGATGAAGAGGATGAAGAACATAAACGTAGTGCCGCTGCAACTGCAGAGAATCAACAAAC]




>consensus_2451#1
CAACTTCACTTCTTGATCAAGTAGATCCAGAGGAACATTTGAATGTGTTTAAATTCGATC
CAGAGTTCTTGGCAAATGAAGCAAAATATGCTGAAATTAGAGAAGCATTATTTGAATCGA
ATGAAGATTCAGAAGCTGAGTCAGATGGTGAAAATGAAGGTGAAGATTCAGACGAATCAG
GTAATGAAGATGATAACGATGATGAAGAGGATGAAGAACATAAACGTAGTGCCGCTGCAA
CTGCAGAGAATCAACAAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2451#0      -GCTCACGGAACTTGCTTCAACGAACTTGGACAA---TTTAAACACATTCAAATGTCCTC 56
consensus_2451#1      CAACTTCACTTCTTGATCAAGTAGATCCAGAGGAACATTTGAATGTGTTTAAATTCGATC 60
                            *    **** *  *    *    **  *   *** **    ** ****    **

consensus_2451#0      TGGATCTACTTGATCAAGAAGTGAAGT-TGTATGAGTGATTTGATCACTTTCTTGAATTA 115
consensus_2451#1      CAGAGTTCTTGGCAAATGAAGCAAAATATGCTGAAATTAGAGAAGCA-TTATTTGAATCG 119
                        **  *  * *   * ****  ** * **    * * *    * ** **  ******  

consensus_2451#0      CATCAAGTTCTGGCAAGACAAGTTGGATGATCTTTCCATCCATCACGACGAATCTGGAAC 175
consensus_2451#1      AATGAAGATTCAG-AAGCTGAGTCAGATGGTGAA---AATGAAGGTGAAGATTCAGACGA 175
                       ** *** *   * ***   ***  **** *      *   *    ** ** ** *    

consensus_2451#0      ATAACTTCTAACATATAAGAAATACGTTTATCACATTGGCCTTCATTTAAGATACGTCGA 235
consensus_2451#1      ATCAGGTAATGAAGATGATAACGATGATGAAGAGGATGAAGAACATAAACGTAGTGCCGC 235
                      ** *  *     * ** * **  * * * *  *   **     ***  * *    * ** 

consensus_2451#0      AGATGTT-CAAAGATTCCATGTACACCTTTTGGTACAAGACGTGAAAGCATTGCACCACA 294
consensus_2451#1      TGCAACTGCAGAGAATCAACAAAC------------------------------------ 259
                       *    * ** *** ** *   **                                    

consensus_2451#0      TTCTTTAAGAACAGATACTGCCACTTCTACACTGTCATCGGTTGTTTGCTCTAGTAGTAA 354
consensus_2451#1      ------------------------------------------------------------
                                                                                  

consensus_2451#0      CGTCAATAGTTCCAGGATTATTAATTCATGAACGACTTTTGGGTTGACCAAATGAGCTAG 414
consensus_2451#1      ------------------------------------------------------------
                                                                                  

consensus_2451#0      AAATCGTGCGGTGGACAAACATCGATCTTTCTGATTACGTCGAAATGCTTTACGGAATTC 474
consensus_2451#1      ------------------------------------------------------------
                                                                                  

consensus_2451#0      ATTGATTAATCGTTTAAGAACCAGTTCTCCAACCTTGGGAAATTTCGAATTTACAACAGC 534
consensus_2451#1      ------------------------------------------------------------
                                                                                  

consensus_2451#0      A 535
consensus_2451#1      -