cluster # 2461

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Schistosoma mansoni
cluster # 2461 cluster # 2461 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2461#0 length = 424 sequences # 1

consensus_2461#1 length = 300 sequences # 1

consensusID : consensus_2461#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 424
fasta sequence

                              [TTATCACGCTACATTAACCTGTCTCCAACCATTCAATACGATCAGCATCTACGAAACACTCAATAAATCAGAGTAAGAGACTGATTACTGAGAATTCAACCGGTGTTAATTGAAGGATATCCATAAAATGAGAAGTGGGGAGCAGAAAAAACTATTATGTGTTTACTGCCAGACAGTAAGCTTTGTATGAATGGACGGATACAATACTTACCATGAAAATGAACTTGTTCGATACACTTCCATAGCAATGCATGATATTAAACCGCTTTTAGATGAAAGAATACAATGACAGTTGCAGACGGGTAAATAAGACATTAATCTATAATTCGGTGATAAGGGTATTATCAAGAAAATAACGGTAAGAACTTAAGTCGGAGTGGTCTTCCTAGGTTCAATAACTACGGAAGACAAGATCTCCAAATAT]

[+] EMBL CD087803             [TTATCACGCTACATTAACCTGTCTCCAACCATTCAATACGATCAGCATCTACGAAACACTCAATAAATCAGAGTAAGAGACTGATTACTGAGAATTCAACCGGTGTTAATTGAAGGATATCCATAAAATGAGAAGTGGGGAGCAGAAAAAACTATTATGTGTTTACTGCCAGACAGTAAGCTTTGTATGAATGGACGGATACAATACTTACCATGAAAATGAACTTGTTCGATACACTTCCATAGCAATGCATGATATTAAACCGCTTTTAGATGAAAGAATACAATGACAGTTGCAGACGGGTAAATAAGACATTAATCTATAATTCGGTGATAAGGGTATTATCAAGAAAATAACGGTAAGAACTTAAGTCGGAGTGGTCTTCCTAGGTTCAATAACTACGGAAGACAAGATCTCCAAATAT]




>consensus_2461#0
TTATCACGCTACATTAACCTGTCTCCAACCATTCAATACGATCAGCATCTACGAAACACT
CAATAAATCAGAGTAAGAGACTGATTACTGAGAATTCAACCGGTGTTAATTGAAGGATAT
CCATAAAATGAGAAGTGGGGAGCAGAAAAAACTATTATGTGTTTACTGCCAGACAGTAAG
CTTTGTATGAATGGACGGATACAATACTTACCATGAAAATGAACTTGTTCGATACACTTC
CATAGCAATGCATGATATTAAACCGCTTTTAGATGAAAGAATACAATGACAGTTGCAGAC
GGGTAAATAAGACATTAATCTATAATTCGGTGATAAGGGTATTATCAAGAAAATAACGGT
AAGAACTTAAGTCGGAGTGGTCTTCCTAGGTTCAATAACTACGGAAGACAAGATCTCCAA
ATAT

consensusID : consensus_2461#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 300
fasta sequence

                              [TCACTACAGAAAATATAGTAGAGGGATTTCGCTTCCTTAACCTAGTTATAGATGATACTAAAATAGAAACTGGTACAAATATACGTCAATTTGACTTTTCAATGTTATAAACGTAACAAAAGAATAAGTGAAGGACCAAAAACAATGGCAACTGAAGTAGTCGAAAACTAAAAGGAATATACGGCAAAATTAATTTGATGCTAGGAGTAGTATTAAGTTCTAGACTCACGAGAAAATGAAACACCAGTCTACTTACACAGCTGAAGTTGTTATCACGCTACATTAACCTGTCTCCAACCA]

[+] EMBL CD181202             [TCACTACAGAAAATATAGTAGAGGGATTTCGCTTCCTTAACCTAGTTATAGATGATACTAAAATAGAAACTGGTACAAATATACGTCAATTTGACTTTTCAATGTTATAAACGTAACAAAAGAATAAGTGAAGGACCAAAAACAATGGCAACTGAAGTAGTCGAAAACTAAAAGGAATATACGGCAAAATTAATTTGATGCTAGGAGTAGTATTAAGTTCTAGACTCACGAGAAAATGAAACACCAGTCTACTTACACAGCTGAAGTTGTTATCACGCTACATTAACCTGTCTCCAACCA]




>consensus_2461#1
TCACTACAGAAAATATAGTAGAGGGATTTCGCTTCCTTAACCTAGTTATAGATGATACTA
AAATAGAAACTGGTACAAATATACGTCAATTTGACTTTTCAATGTTATAAACGTAACAAA
AGAATAAGTGAAGGACCAAAAACAATGGCAACTGAAGTAGTCGAAAACTAAAAGGAATAT
ACGGCAAAATTAATTTGATGCTAGGAGTAGTATTAAGTTCTAGACTCACGAGAAAATGAA
ACACCAGTCTACTTACACAGCTGAAGTTGTTATCACGCTACATTAACCTGTCTCCAACCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2461#0      TTATCACGCTACATTAACCTGTCTCCAACCATTCAATACGATCAGCATCTACGAAACACT 60
consensus_2461#1      -------------------------------------------------------TCACT 5
                                                                              ****

consensus_2461#0      CAATAAATCAGAGTAAGAGACTGATTACTGAGAATTCAACCGGTGTTAATTGAAGGATAT 120
consensus_2461#1      ACAGAAAATATAGTAGAGG---GATTTC-GCTTCCTTAACC-----TAGTTATAGATGAT 56
                        * ***  * ****   *   **** * *     * ****     ** **  **   **

consensus_2461#0      CCATAAAATGAGAAGTGGGGAGCAGAAAAAACTATTATGTGTTT-ACTGCCAGACA-GTA 178
consensus_2461#1      AC-TAAAATAGAAACTGGTACAAATATACGTCAATTTGACTTTTCAATGTTATAAACGTA 115
                       * ******   ** ***     * * *   * ***     *** * **  * * * ***

consensus_2461#0      AGCTTTGTATGAATGGACGGATACAATACTTACCATGAAAATGAACTTGTTCGATACACT 238
consensus_2461#1      ACAAAAGAATAAGTGAAGGACCAAAA-----ACAATGGCAACTGAAGTAGTCGAAA-ACT 169
                      *     * ** * ** * *   * **     ** ***  **   *  *  **** * ***

consensus_2461#0      TCCATAGCAATGCA-TGATATTAAACCGCTTTTAGATGAAAGAATACAATGACAGTTGCA 297
consensus_2461#1      AAAAGGAATATACGGCAAAATTAATTTGATGCTAGGAGTAGTATTA-AGTTCTAGACTCA 228
                         *     ** *    * *****   * *  ***  * *  * ** * *   **   **

consensus_2461#0      GACGGGTAAATAAGACATTAATCTATAATTCGGTGATAAGGGTATTATCAAGAAAATAAC 357
consensus_2461#1      --CGAGAAAATGAAACACCAGTCTACT-TACACAGCTGAAGTTGTTATCACG-------C 278
                        ** * **** * ***  * ****   * *   * * * * * ****** *       *

consensus_2461#0      GGTAAGAACTTAAGTCGGAGTGGTCTTCCTAGGTTCAATAACTACGGAAGACAAGATCTC 417
consensus_2461#1      TACATTAACCTGTCTCCAACCA-------------------------------------- 300
                         *  *** *   **  *                                         

consensus_2461#0      CAAATAT 424
consensus_2461#1      -------