cluster # 2479

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Schistosoma mansoni
cluster # 2479 cluster # 2479 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2479#0 length = 291 sequences # 1

consensus_2479#1 length = 118 sequences # 1

consensusID : consensus_2479#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 291
fasta sequence

                              [AGTGAATAGTTGTGGAGTGCGAGAATGAGAGAATGAGTGTGTATGTGTGTGTGTGTGTGTGTTTGCACATGTGACTAGTGGTGGATAGGATGGGAGAGGTTTGAGTGAAGCACGAGAAATGATGAGGGGAATCGGTGTTCCGAGAGGTTAGCAACACTGACAGAAATGTGAGGAAGTCAGTACTGGAAGAAGGAAGGTGAGTGTTACGGGATGTGAGTGAAGCACCGATTGGTGGCGTTGAACATCGCACTTTCTGTATGCTTTGTCCGTAAATATATTCCACATTGACGG]

[+] EMBL CD088275             [AGTGAATAGTTGTGGAGTGCGAGAATGAGAGAATGAGTGTGTATGTGTGTGTGTGTGTGTGTTTGCACATGTGACTAGTGGTGGATAGGATGGGAGAGGTTTGAGTGAAGCACGAGAAATGATGAGGGGAATCGGTGTTCCGAGAGGTTAGCAACACTGACAGAAATGTGAGGAAGTCAGTACTGGAAGAAGGAAGGTGAGTGTTACGGGATGTGAGTGAAGCACCGATTGGTGGCGTTGAACATCGCACTTTCTGTATGCTTTGTCCGTAAATATATTCCACATTGACGG]




>consensus_2479#0
AGTGAATAGTTGTGGAGTGCGAGAATGAGAGAATGAGTGTGTATGTGTGTGTGTGTGTGT
GTTTGCACATGTGACTAGTGGTGGATAGGATGGGAGAGGTTTGAGTGAAGCACGAGAAAT
GATGAGGGGAATCGGTGTTCCGAGAGGTTAGCAACACTGACAGAAATGTGAGGAAGTCAG
TACTGGAAGAAGGAAGGTGAGTGTTACGGGATGTGAGTGAAGCACCGATTGGTGGCGTTG
AACATCGCACTTTCTGTATGCTTTGTCCGTAAATATATTCCACATTGACGG

consensusID : consensus_2479#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 118
fasta sequence

                              [AGGAAGGTGAGTGTTACGGGATGTGAGTGAAGCACCGNATTGATGGTGTTGAANATGGCACTTNCTGTGTGCNTTGACCNNANATATATCCCACATTGANNGNATGTCACGTTTGTCA]

[+] EMBL SMRAP100             [AGGAAGGTGAGTGTTACGGGATGTGAGTGAAGCACCGNATTGATGGTGTTGAANATGGCACTTNCTGTGTGCNTTGACCNNANATATATCCCACATTGANNGNATGTCACGTTTGTCA]




>consensus_2479#1
AGGAAGGTGAGTGTTACGGGATGTGAGTGAAGCACCGNATTGATGGTGTTGAANATGGCA
CTTNCTGTGTGCNTTGACCNNANATATATCCCACATTGANNGNATGTCACGTTTGTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2479#0      AGTGAATAGTTGTGGAGTGCGAGAATGAGAGAATGAGTGTGTATGTGTGTGTGTGTGTGT 60
consensus_2479#1      ------------------------------------------------------------
                                                                                  

consensus_2479#0      GTTTGCACATGTGACTAGTGGTGGATAGGATGGGAGAGGTTTGAGTGAAGCACGAGAAAT 120
consensus_2479#1      ------------------------------------------------------------
                                                                                  

consensus_2479#0      GATGAGGGGAATCGGTGTTCCGAGAGGTTAGCAACACTGACAGAAATGTGAGGAAGTCAG 180
consensus_2479#1      ------------------------------------------------------------
                                                                                  

consensus_2479#0      TACTGGAAGAAGGAAGGTGAGTGTTACGGGATGTGAGTGAAGCACCGA-TTGGTGGCGTT 239
consensus_2479#1      ----------AGGAAGGTGAGTGTTACGGGATGTGAGTGAAGCACCGNATTGATGGTGTT 50
                                *************************************  *** *** ***

consensus_2479#0      GAACATCGCACTTTCTGTATGCTTTGTCCGTAAATATATTCCACATTGACGG-------- 291
consensus_2479#1      GAANATGGCACTTNCTGTGTGCNTTGACCNNANATATATCCCACATTGANNGNATGTCAC 110
                      *** ** ****** **** *** *** **  * ****** *********  *        

consensus_2479#0      --------
consensus_2479#1      GTTTGTCA 118