cluster # 2494

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Schistosoma mansoni
cluster # 2494 cluster # 2494 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2494#0 length = 361 sequences # 1

consensus_2494#1 length = 230 sequences # 1

consensusID : consensus_2494#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 361
fasta sequence

                              [TATTGAACATGCAATAATACTTTCCGTACAGTTCTTGGTCATAGGAAGGATGAAGCAATGTCAAATTACTCCATATTATGCCAGACTTTTCGTCTCGACTCTCAGTAACTTTGTAAAGATTGGGTTTAACATGATACTTTCCGCCTCTCCAACGGACAGTAGTATATCTTATACCATTTGAACCAACCCGGAATTCACATGCAATAACAGGATGATAACTTGAATTGATTGTGTTAATATGGAGACTGTAAGCACCAACCACCTCATGTTTTTTCATCAAGTGGACAGTACTACTAATCTTGTTTAAAACTCCATAGACGTGAACGTCTATTTGACGACTAGCAAGTCCATTAGTACATTG]

[+] EMBL CD188070             [TATTGAACATGCAATAATACTTTCCGTACAGTTCTTGGTCATAGGAAGGATGAAGCAATGTCAAATTACTCCATATTATGCCAGACTTTTCGTCTCGACTCTCAGTAACTTTGTAAAGATTGGGTTTAACATGATACTTTCCGCCTCTCCAACGGACAGTAGTATATCTTATACCATTTGAACCAACCCGGAATTCACATGCAATAACAGGATGATAACTTGAATTGATTGTGTTAATATGGAGACTGTAAGCACCAACCACCTCATGTTTTTTCATCAAGTGGACAGTACTACTAATCTTGTTTAAAACTCCATAGACGTGAACGTCTATTTGACGACTAGCAAGTCCATTAGTACATTG]




>consensus_2494#0
TATTGAACATGCAATAATACTTTCCGTACAGTTCTTGGTCATAGGAAGGATGAAGCAATG
TCAAATTACTCCATATTATGCCAGACTTTTCGTCTCGACTCTCAGTAACTTTGTAAAGAT
TGGGTTTAACATGATACTTTCCGCCTCTCCAACGGACAGTAGTATATCTTATACCATTTG
AACCAACCCGGAATTCACATGCAATAACAGGATGATAACTTGAATTGATTGTGTTAATAT
GGAGACTGTAAGCACCAACCACCTCATGTTTTTTCATCAAGTGGACAGTACTACTAATCT
TGTTTAAAACTCCATAGACGTGAACGTCTATTTGACGACTAGCAAGTCCATTAGTACATT
G

consensusID : consensus_2494#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 230
fasta sequence

                              [CGAGCCGGTCCGACGGCTTCACGGAACTTTGTAAAGATTGGGTTTACATGATACTTTCCGCCTCTCCAACGGACAGTAGTATATCTTATACCATTTGAACCAACCCGGAATTCACATGCAATAACAGGATGATAACTTGAATTGATTGTGTTAATATGGAGACTGTAAGCACCAACCACCTCATGTTTTTTCATCAAGTGGACAGTACTACTAATCTTTACAAAGTTCCG]

[+] EMBL CD065797             [CGAGCCGGTCCGACGGCTTCACGGAACTTTGTAAAGATTGGGTTTACATGATACTTTCCGCCTCTCCAACGGACAGTAGTATATCTTATACCATTTGAACCAACCCGGAATTCACATGCAATAACAGGATGATAACTTGAATTGATTGTGTTAATATGGAGACTGTAAGCACCAACCACCTCATGTTTTTTCATCAAGTGGACAGTACTACTAATCTTTACAAAGTTCCG]




>consensus_2494#1
CGAGCCGGTCCGACGGCTTCACGGAACTTTGTAAAGATTGGGTTTACATGATACTTTCCG
CCTCTCCAACGGACAGTAGTATATCTTATACCATTTGAACCAACCCGGAATTCACATGCA
ATAACAGGATGATAACTTGAATTGATTGTGTTAATATGGAGACTGTAAGCACCAACCACC
TCATGTTTTTTCATCAAGTGGACAGTACTACTAATCTTTACAAAGTTCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2494#0      TATTGAACATGCAATAATACTTTCCGTACAGTTCTTGGTCATAGGAAGGATGAAGCAATG 60
consensus_2494#1      ------------------------------------------------------------
                                                                                  

consensus_2494#0      TCAAATTACTCCATATTATGCCAGACTTTTCGTCTCGACTCTCAGTAACTTTGTAAAGAT 120
consensus_2494#1      --------------------CGAGCCGGTCCGA--CGGCTTCACGGAACTTTGTAAAGAT 38
                                          * ** *  * **   ** **    * **************

consensus_2494#0      TGGGTTTAACATGATACTTTCCGCCTCTCCAACGGACAGTAGTATATCTTATACCATTTG 180
consensus_2494#1      TGGGTTTA-CATGATACTTTCCGCCTCTCCAACGGACAGTAGTATATCTTATACCATTTG 97
                      ******** ***************************************************

consensus_2494#0      AACCAACCCGGAATTCACATGCAATAACAGGATGATAACTTGAATTGATTGTGTTAATAT 240
consensus_2494#1      AACCAACCCGGAATTCACATGCAATAACAGGATGATAACTTGAATTGATTGTGTTAATAT 157
                      ************************************************************

consensus_2494#0      GGAGACTGTAAGCACCAACCACCTCATGTTTTTTCATCAAGTGGACAGTACTACTAATCT 300
consensus_2494#1      GGAGACTGTAAGCACCAACCACCTCATGTTTTTTCATCAAGTGGACAGTACTACTAATCT 217
                      ************************************************************

consensus_2494#0      TGTTTAAAACTCCATAGACGTGAACGTCTATTTGACGACTAGCAAGTCCATTAGTACATT 360
consensus_2494#1      T-TACAAAGTTCCG---------------------------------------------- 230
                      * *  ***  ***                                               

consensus_2494#0      G 361
consensus_2494#1      -