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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2529#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence
[TGGAGGTAACAGATCAGAGAGAAAACGTCCATCTGATGAAAATATCTAAATTAGAATGAGGATAAAAGTATTATTTAATACATCCAAAAATAATTTACAATATTTTCTCAAGTTCAGCTAAAAAATGAGGAGCATAATGATATCACATTACACAAATAAATTACATACTATACAACCAACTACATGGAAAAACAACACTTGGAAAACCGAGTCCAGAAATCGTATAAACAAAAATAAATAAGAGTAGTGAAAGTGAACAACCCTGATGAACTGTTAAGGTAATCATCGGATTGCCCAGATTTTGTTTATAATATTAAAGCCTTACTAGTAACGGTAACCTCAAGTGCTTTTCTTCTAATTTAGTTTGTCGCATGACCTCTGAACTTTTCTGATCGGTTGCCATTAATTTTATTTCGCTGACTTTCTGAATGCTTGAAGGTCATGCTTATTTTTACATAATGAGTTGTATCACTTTGAGTCCTTCTGCTAGAATAGTAATTTTTTTCATACATCTCGTCTTTTTCTTATGTTACCAGCTAATTGTTGAATTGTGTGTCGGCTGCCATTATCCATTCCCCAAGATAACCGTTCGTATTAGGATAGCTTATTTGTTCCTTAATTTTCAAGTATCTTA]
[+] EMBL CD066105 [TGGAGGTAACAGATCAGAGAGAAAACGTCCATCTGATGAAAATATCTAAATTAGAATGAGGATAAAAGTATTATTTAATACATCCAAAAATAATTTACAATATTTTCTCAAGTTCAGCTAAAAAATGAGGAGCATAATGATATCACATTACACAAATAAATTACATACTATACAACCAACTACATGGAAAAACAACACTTGGAAAACCGAGTCCAGAAATCGTATAAACAAAAATAAATAAGAGTAGTGAAAGTGAACAACCCTGATGAACTGTTAAGGTAATCATCGGATTGCCCAGATTTTGTTTATAATATTAAAGCCTTACTAGTAACGGTAACCTCAAGTGCTTTTCTTCTAATTTAGTTTGTCGCATGACCTCTGAACTTTTCTGATCGGTTGCCATTAATTTTATTTCGCTGACTTTCTGAATGCTTGAAGGTCATGCTTATTTTTACATAATGAGTTGTATCACTTTGAGTCCTTCTGCTAGAATAGTAATTTTTTTCATACATCTCGTCTTTTTCTTATGTTACCAGCTAATTGTTGAATTGTGTGTCGGCTGCCATTATCCATTCCCCAAGATAACCGTTCGTATTAGGATAGCTTATTTGTTCCTTAATTTTCAAGTATCTTA]
consensusID : consensus_2529#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 339 fasta sequence
[GCTGACTCTGGAGAATTGATTTTGTCTACAGGAACGTGTATTCGAATATTTTCATCAGATGGACGTTTTCTCTCTGATCTGTTACCTCCAAATCAACCAGGTGATGATCATTTCCGTGTTCGTATCTCAACATTACCGTCAAGAGCTTCGCTGGATACTTCTTATTTTAATGCTTTGAATAACTCACATGACAATCCAAATTCGGAATATATAAATGCTGGTCGTTTGAGTTTATCTGAAATCCTCCATTCAAGTGGTCCTTCAAAGTCACGAATTCCTCCATCACGTGGTCAATTCGGTGGTGTGTCATTCAGTACTGCACCAACGGAGTCTGCTAAT]
[+] EMBL CD066715 [GCTGACTCTGGAGAATTGATTTTGTCTACAGGAACGTGTATTCGAATATTTTCATCAGATGGACGTTTTCTCTCTGATCTGTTACCTCCAAATCAACCAGGTGATGATCATTTCCGTGTTCGTATCTCAACATTACCGTCAAGAGCTTCGCTGGATACTTCTTATTTTAATGCTTTGAATAACTCACATGACAATCCAAATTCGGAATATATAAATGCTGGTCGTTTGAGTTTATCTGAAATCCTCCATTCAAGTGGTCCTTCAAAGTCACGAATTCCTCCATCACGTGGTCAATTCGGTGGTGTGTCATTCAGTACTGCACCAACGGAGTCTGCTAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2529#0 TGGAGGTAACAGATCAGAGAGAAAACGTCCATCTGATGAAAATATCTAAATTAGAATGAG 60
consensus_2529#1 ------------------------------------------------------------
consensus_2529#0 GATAAAAGTATTATTTAATACATCCAAAAATAATTTACAATATTTTCTCAAGTTCAGCTA 120
consensus_2529#1 ------------------------------------------------------------
consensus_2529#0 AAAAATGAGGAGCATAATGATATCACATTACACAAATAAATTACATACTATACAACCAAC 180
consensus_2529#1 ------------------------------------------------------------
consensus_2529#0 TACATGGAAAAACAACACTTGGAAAACCGAGTCCAGAAATCGTATAAACAAAAATAAATA 240
consensus_2529#1 -----------GCTGACTCTGGAGAATTGATT-------TTGTCTACAGGAACGTGTATT 42
* **** ** ** * * ** ** * ** * **
consensus_2529#0 AGAGTAGTGAAAGTGAACAACCCTGATGAACTGTTAAGGTAATCATCGGATTGCCCAGAT 300
consensus_2529#1 CGAATATTTTCATCAGATGGACGTTTTCTCTCTGATCTGTTACCTCCAAATCAACCAGG- 101
** ** * * * * * * ** * * * ** ****
consensus_2529#0 TTTGTTTATAATATTAAAGCCTTACTAGTAACGGTAACCTCAAGTGCTTTTCTTCTAATT 360
consensus_2529#1 --TGATGATCATTTCCGTGTTCGTATCTCAACATTACCGTCAAGAGCTTCGCTGGATACT 159
** * ** ** * * * *** ** * ***** **** ** * *
consensus_2529#0 TAGTTTGTCGCATGACCTCTGAACTTTTCTGATCGGTTGCCATTAATTTTATTTCGCTGA 420
consensus_2529#1 TCTTATTTTA-ATG--CTTTGAATAACTCACATGA--------CAATCCAAATTCG--GA 206
* * * * *** ** **** ** ** *** * **** **
consensus_2529#0 CTTTCTGAATGCTTGAAGGTCATGCTTATTTTTACATAATGAGTTGTATCACTTTGAGTC 480
consensus_2529#1 ATATATAAATGCTGGTCGTTTGAGTTTATCT---------GAAATCCTCCA-TTCAAGTG 256
* * * ****** * * * * **** * ** * ** ** ***
consensus_2529#0 CTTCTGCTAGAATAGTAATTTTTTTCATACATCTCGTCTTTTTCTTATGTTACCAGCTAA 540
consensus_2529#1 GTCCT-TCAAAGTCACGAATTCCTCCAT-CACGTGGTCAATTCGGTGGTGTGTCA-TTCA 313
* ** * * * * ** * *** ** * *** ** * * ** * *
consensus_2529#0 TTGTTGAATTGTGTGTCGGCTGCCATTATCCATTCCCCAAGATAACCGTTCGTATTAGGA 600
consensus_2529#1 GTACTGCACCA-ACGGAGTCTGCTAAT--------------------------------- 339
* ** * * * **** * *
consensus_2529#0 TAGCTTATTTGTTCCTTAATTTTCAAGTATCTTA 634
consensus_2529#1 ----------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||