cluster # 2547

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Schistosoma mansoni
cluster # 2547 cluster # 2547 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2547#0 length = 303 sequences # 1

consensus_2547#1 length = 295 sequences # 1

consensusID : consensus_2547#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 303
fasta sequence

                              [GAGCACCCTAATTAATTATGTCGGAGAACTCCTGTAGCTTATCATCCCCATTTGTCATTCCCCCNTTCTCCAATTCTTTCTTTCCTTGCCCGGGGGGAACGCCGCCGGGTCCGTTTGGCTTGACCGGTCAAGCCAACCCATGGGCCGCCGTTCGCCAAAGCTCTTTTGGTAGTCCAGTGCCGCCTCCCTTTGCTCACCTAGTCCGGTAGCCTGCTGTGTTCCCTCCAGACTATGGTGAGCTGGCCTCTTCTCTGCACCTCCTCTCCCCCTGTTCTTTTTCTGCTATGTGCCCGGTCAAGTACG]

[+] EMBL CD089508             [GAGCACCCTAATTAATTATGTCGGAGAACTCCTGTAGCTTATCATCCCCATTTGTCATTCCCCCNTTCTCCAATTCTTTCTTTCCTTGCCCGGGGGGAACGCCGCCGGGTCCGTTTGGCTTGACCGGTCAAGCCAACCCATGGGCCGCCGTTCGCCAAAGCTCTTTTGGTAGTCCAGTGCCGCCTCCCTTTGCTCACCTAGTCCGGTAGCCTGCTGTGTTCCCTCCAGACTATGGTGAGCTGGCCTCTTCTCTGCACCTCCTCTCCCCCTGTTCTTTTTCTGCTATGTGCCCGGTCAAGTACG]




>consensus_2547#0
GAGCACCCTAATTAATTATGTCGGAGAACTCCTGTAGCTTATCATCCCCATTTGTCATTC
CCCCNTTCTCCAATTCTTTCTTTCCTTGCCCGGGGGGAACGCCGCCGGGTCCGTTTGGCT
TGACCGGTCAAGCCAACCCATGGGCCGCCGTTCGCCAAAGCTCTTTTGGTAGTCCAGTGC
CGCCTCCCTTTGCTCACCTAGTCCGGTAGCCTGCTGTGTTCCCTCCAGACTATGGTGAGC
TGGCCTCTTCTCTGCACCTCCTCTCCCCCTGTTCTTTTTCTGCTATGTGCCCGGTCAAGT
ACG

consensusID : consensus_2547#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 295
fasta sequence

                              [GCGTTTTTCCATGGGGGAGCACCCTAATTAATTATGTCGGAGAACTCCTGTTGCTTATCATCCCCATTTGTCATTCCCCCTTCTCCATTCTTCTTCCTGCCGGGGGACGCCCGGTCGTTGCTGACGTCAGCAACCATGGCCGCGTCGCCAGAGCTCTTTGGTAGTCCAGTGCCGCCTCCCTTTGCTCACCTAGTCCGGTAGCCTGCTGTGTTCCCTCCAGACTATGGTGAGCTGGCCTCTTCTCTGCACCTCCTCTCCCCCTGTTCTTTTTCTGCTATGTGCCCGGTCAAGTACG]

[+] EMBL CD089544             [GCGTTTTTCCATGGGGGAGCACCCTAATTAATTATGTCGGAGAACTCCTGTTGCTTATCATCCCCATTTGTCATTCCCCCTTCTCCATTCTTCTTCCTGCCGGGGGACGCCCGGTCGTTGCTGACGTCAGCAACCATGGCCGCGTCGCCAGAGCTCTTTGGTAGTCCAGTGCCGCCTCCCTTTGCTCACCTAGTCCGGTAGCCTGCTGTGTTCCCTCCAGACTATGGTGAGCTGGCCTCTTCTCTGCACCTCCTCTCCCCCTGTTCTTTTTCTGCTATGTGCCCGGTCAAGTACG]




>consensus_2547#1
GCGTTTTTCCATGGGGGAGCACCCTAATTAATTATGTCGGAGAACTCCTGTTGCTTATCA
TCCCCATTTGTCATTCCCCCTTCTCCATTCTTCTTCCTGCCGGGGGACGCCCGGTCGTTG
CTGACGTCAGCAACCATGGCCGCGTCGCCAGAGCTCTTTGGTAGTCCAGTGCCGCCTCCC
TTTGCTCACCTAGTCCGGTAGCCTGCTGTGTTCCCTCCAGACTATGGTGAGCTGGCCTCT
TCTCTGCACCTCCTCTCCCCCTGTTCTTTTTCTGCTATGTGCCCGGTCAAGTACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2547#0      ----------------GAGCACCCTAATTAATTATGTCGGAGAACTCCTGTAGCTTATCA 44
consensus_2547#1      GCGTTTTTCCATGGGGGAGCACCCTAATTAATTATGTCGGAGAACTCCTGTTGCTTATCA 60
                                      *********************************** ********

consensus_2547#0      TCCCCATTTGTCATTCCCCCNTTCTCCAATTCTTTCTTTCCTTGCCCGGGGGGAACGCCG 104
consensus_2547#1      TCCCCATTTGTCATTCCCCCTT-CTCCA----TTCTTCTTCCTGCCGGGGGA------CG 109
                      ******************** * *****    **  * * * **** ****       **

consensus_2547#0      CCGGGTCCGTTTGGCTTGACCGGTCAAGCCAACCCATGGGCCGCCGTTCGCCAAAGCTCT 164
consensus_2547#1      CCCGGTC--GTTG--CTGAC--GTCAG--CAACC-ATGG-CCGCG--TCGCCAGAGCTCT 157
                      ** ****   ***   ****  ****   ***** **** ****   ****** ******

consensus_2547#0      TTTGGTAGTCCAGTGCCGCCTCCCTTTGCTCACCTAGTCCGGTAGCCTGCTGTGTTCCCT 224
consensus_2547#1      TT-GGTAGTCCAGTGCCGCCTCCCTTTGCTCACCTAGTCCGGTAGCCTGCTGTGTTCCCT 216
                      ** *********************************************************

consensus_2547#0      CCAGACTATGGTGAGCTGGCCTCTTCTCTGCACCTCCTCTCCCCCTGTTCTTTTTCTGCT 284
consensus_2547#1      CCAGACTATGGTGAGCTGGCCTCTTCTCTGCACCTCCTCTCCCCCTGTTCTTTTTCTGCT 276
                      ************************************************************

consensus_2547#0      ATGTGCCCGGTCAAGTACG 303
consensus_2547#1      ATGTGCCCGGTCAAGTACG 295
                      *******************