cluster # 2566

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Schistosoma mansoni
cluster # 2566 cluster # 2566 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2566#0 length = 312 sequences # 1

consensus_2566#1 length = 230 sequences # 1

consensusID : consensus_2566#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 312
fasta sequence

                              [TGAAACTCCTAAGGTATATGGAATTAAACGACCCCTGCTATTATGCAACTTAGACGTTTCACATTTTAATATTATTCGTGCTTATCCTTAAATGAATTTGTCAGCGTGTTTAAAACAATCAAATATATTTACAATCAAAAACGTATGTGATTTACCTGCAAATAAACGACCAAGAATACTAGCACAACCGATCGTTAAAAAAAGGGATTCTGAACTAGAAAATGCATAGTTTCTCTTTAAAGCGTTGATATATTTAACCGCTGATTGATCGAACTGATTAGATGTTCGATTATATTTAATCTCATCGGTCAA]

[+] EMBL CD089923             [TGAAACTCCTAAGGTATATGGAATTAAACGACCCCTGCTATTATGCAACTTAGACGTTTCACATTTTAATATTATTCGTGCTTATCCTTAAATGAATTTGTCAGCGTGTTTAAAACAATCAAATATATTTACAATCAAAAACGTATGTGATTTACCTGCAAATAAACGACCAAGAATACTAGCACAACCGATCGTTAAAAAAAGGGATTCTGAACTAGAAAATGCATAGTTTCTCTTTAAAGCGTTGATATATTTAACCGCTGATTGATCGAACTGATTAGATGTTCGATTATATTTAATCTCATCGGTCAA]




>consensus_2566#0
TGAAACTCCTAAGGTATATGGAATTAAACGACCCCTGCTATTATGCAACTTAGACGTTTC
ACATTTTAATATTATTCGTGCTTATCCTTAAATGAATTTGTCAGCGTGTTTAAAACAATC
AAATATATTTACAATCAAAAACGTATGTGATTTACCTGCAAATAAACGACCAAGAATACT
AGCACAACCGATCGTTAAAAAAAGGGATTCTGAACTAGAAAATGCATAGTTTCTCTTTAA
AGCGTTGATATATTTAACCGCTGATTGATCGAACTGATTAGATGTTCGATTATATTTAAT
CTCATCGGTCAA

consensusID : consensus_2566#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 230
fasta sequence

                              [ATAGGATCTACCATTAGAGGAAACCGACATAAAAATTTTCGATTTGTATTCAAACCCCTTTCAATATACAATCCTGCAAATAAACGACCAAGAATACTAGCACAACCGATCGTTAAAAAAAGGGATTCTGAACTAGAAAATGCATAGTTTCTCTTTAAAGCGTTGATATATTTAACCGCTGATTGATCGAACTGATTAGATGTTCGATTATATTTAATCTCATCGGTCAA]

[-] EMBL CD192387             [ATAGGATCTACCATTAGAGGAAACCGACATAAAAATTTTCGATTTGTATTCAAACCCCTTTCAATATACAATCCTGCAAATAAACGACCAAGAATACTAGCACAACCGATCGTTAAAAAAAGGGATTCTGAACTAGAAAATGCATAGTTTCTCTTTAAAGCGTTGATATATTTAACCGCTGATTGATCGAACTGATTAGATGTTCGATTATATTTAATCTCATCGGTCAA]




>consensus_2566#1
ATAGGATCTACCATTAGAGGAAACCGACATAAAAATTTTCGATTTGTATTCAAACCCCTT
TCAATATACAATCCTGCAAATAAACGACCAAGAATACTAGCACAACCGATCGTTAAAAAA
AGGGATTCTGAACTAGAAAATGCATAGTTTCTCTTTAAAGCGTTGATATATTTAACCGCT
GATTGATCGAACTGATTAGATGTTCGATTATATTTAATCTCATCGGTCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2566#0      TGAAACTCCTAAGGTATATGGAATTAAACGACCCCTGCTATTATGCAACTTAGACGTTTC 60
consensus_2566#1      ------------------------------------------------------------
                                                                                  

consensus_2566#0      ACATTTTAATATTATTCGTGCTTATCCTTAAATGAATTTGTCAGCGTGTTTAAAACAATC 120
consensus_2566#1      --------------ATAGGATCTACCATTAGAGGAAACCGACA------TAAAAATTTTC 40
                                     * *    ** * *** * ***   * **      * ****   **

consensus_2566#0      AAAT-ATATTTACAATCAAAAACGTATGTGATTTACCTGCAAATAAACGACCAAGAATAC 179
consensus_2566#1      GATTTGTATTCAAACCCCTTTCAATATACAAT---CCTGCAAATAAACGACCAAGAATAC 97
                       * *  **** * *  *       ***   **   *************************

consensus_2566#0      TAGCACAACCGATCGTTAAAAAAAGGGATTCTGAACTAGAAAATGCATAGTTTCTCTTTA 239
consensus_2566#1      TAGCACAACCGATCGTTAAAAAAAGGGATTCTGAACTAGAAAATGCATAGTTTCTCTTTA 157
                      ************************************************************

consensus_2566#0      AAGCGTTGATATATTTAACCGCTGATTGATCGAACTGATTAGATGTTCGATTATATTTAA 299
consensus_2566#1      AAGCGTTGATATATTTAACCGCTGATTGATCGAACTGATTAGATGTTCGATTATATTTAA 217
                      ************************************************************

consensus_2566#0      TCTCATCGGTCAA 312
consensus_2566#1      TCTCATCGGTCAA 230
                      *************