cluster # 259

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Schistosoma mansoni
cluster # 259 cluster # 259 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_259#0 length = 468 sequences # 1

consensus_259#1 length = 224 sequences # 1

consensusID : consensus_259#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 468
fasta sequence

                              [TGAGGTACAAGTGGGTGGTTGATAGTGGAGTAGTATATTCAGCGGAACGATGAGTGTAATTAGCGATTACATGAGAACTGCACATGATAGTGTGGATGAATTGCTTGACTTGTATGAGAATGTGATGAGTTAGTTTGAGTGGTGTGATGCTTGTATTGTGCATGAGCTTCTGTCGATGTAGAGGAGATCAGGGACTAGAGACTTGTGAGTCAGTAATGTTATGAGATGAGATTGGTGTTGTTGTATGTTGATCAAGCATGTAGATTGGTGATGTGGTAGTGGAAGGTTGACTCATTGTCTTAGAGTGCGCCTATGAGATTGTGGTATTTGGTGAAGAAACTGATGCAGTTGAGTGTGACATGAAGGCGTTGGTTCACAGTGAAAGGGTGTGTGTGTGTGAGTGAATCGTTGATGTGGACAGCGATTGCGCGAAGTGGTTTGTCCGTTAGCAATTCGCGTGACTTTTTG]

[+] EMBL CD157311             [TGAGGTACAAGTGGGTGGTTGATAGTGGAGTAGTATATTCAGCGGAACGATGAGTGTAATTAGCGATTACATGAGAACTGCACATGATAGTGTGGATGAATTGCTTGACTTGTATGAGAATGTGATGAGTTAGTTTGAGTGGTGTGATGCTTGTATTGTGCATGAGCTTCTGTCGATGTAGAGGAGATCAGGGACTAGAGACTTGTGAGTCAGTAATGTTATGAGATGAGATTGGTGTTGTTGTATGTTGATCAAGCATGTAGATTGGTGATGTGGTAGTGGAAGGTTGACTCATTGTCTTAGAGTGCGCCTATGAGATTGTGGTATTTGGTGAAGAAACTGATGCAGTTGAGTGTGACATGAAGGCGTTGGTTCACAGTGAAAGGGTGTGTGTGTGTGAGTGAATCGTTGATGTGGACAGCGATTGCGCGAAGTGGTTTGTCCGTTAGCAATTCGCGTGACTTTTTG]




>consensus_259#0
TGAGGTACAAGTGGGTGGTTGATAGTGGAGTAGTATATTCAGCGGAACGATGAGTGTAAT
TAGCGATTACATGAGAACTGCACATGATAGTGTGGATGAATTGCTTGACTTGTATGAGAA
TGTGATGAGTTAGTTTGAGTGGTGTGATGCTTGTATTGTGCATGAGCTTCTGTCGATGTA
GAGGAGATCAGGGACTAGAGACTTGTGAGTCAGTAATGTTATGAGATGAGATTGGTGTTG
TTGTATGTTGATCAAGCATGTAGATTGGTGATGTGGTAGTGGAAGGTTGACTCATTGTCT
TAGAGTGCGCCTATGAGATTGTGGTATTTGGTGAAGAAACTGATGCAGTTGAGTGTGACA
TGAAGGCGTTGGTTCACAGTGAAAGGGTGTGTGTGTGTGAGTGAATCGTTGATGTGGACA
GCGATTGCGCGAAGTGGTTTGTCCGTTAGCAATTCGCGTGACTTTTTG

consensusID : consensus_259#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 224
fasta sequence

                              [GAACTAGCCTGAGCTCCACCGGCGGTGCGCTGTCAGATCTAGAACTATTCGCGATCCCCCGGGCTGCTCGAATACCGGATGGATTGACTATCTCGTACTAAACAGGATTACCATAGCAACGGCCAGATTGTACTTCACTGATGTACTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCC]

[+] EMBL BG932053             [GAACTAGCCTGAGCTCCACCGGCGGTGCGCTGTCAGATCTAGAACTATTCGCGATCCCCCGGGCTGCTCGAATACCGGATGGATTGACTATCTCGTACTAAACAGGATTACCATAGCAACGGCCAGATTGTACTTCACTGATGTACTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCC]




>consensus_259#1
GAACTAGCCTGAGCTCCACCGGCGGTGCGCTGTCAGATCTAGAACTATTCGCGATCCCCC
GGGCTGCTCGAATACCGGATGGATTGACTATCTCGTACTAAACAGGATTACCATAGCAAC
GGCCAGATTGTACTTCACTGATGTACTCATTAGTAGGGTAAAACTAACCTGTCTCACGAC
GGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_259#0      TGAGGTACAAGTGGGTGGTTGATAGTGGAGTAGTATATTCAGCGGAACGATGAGTGTAAT 60
consensus_259#1      ------------------------------------------------------------
                                                                                 

consensus_259#0      TAGCGATTACATGAGAACTGCACATGATAGTGTGGATGAATTGCTTGACTTGTATGAGAA 120
consensus_259#1      ---------------------------------------------------GAACTAGCC 9
                                                                        * *  **  

consensus_259#0      TGTGATGAGTTAGTT-TGAGTGGTGTGATGCTTGTATTGTGCATGAGCTTCTGTCGATGT 179
consensus_259#1      TGAGCTCCACCGGCGGTGCGCTGTCAGAT-CTAGAACTATTCGCGATCCCCCGGGCTGCT 68
                     ** * *      *   ** *  **  *** ** * * * * *  ** *  * *      *

consensus_259#0      AGAGGAGATCAGGGACTAGAGACTTGTGAGTCAGTAATGTTATGAGATGAGATTGGTGTT 239
consensus_259#1      CGAATACCGGATGGATTGACTATCTCGTACTAAACAGGATTACCA--TAGCAACGGCCAG 126
                      **  *    * *** *    *  *   * * *  *   ***  *  *   *  **    

consensus_259#0      GTTGTATGTTGATCAAGCATGTAGATTGGTGATGTGGTAGTGGAAGGTTGACTCATTGTC 299
consensus_259#1      ATTGTACTTCACTGATGTACTC--ATTAGTAGGGTAAAACTAACCTGTCT-CACGACGGT 183
                      *****  *   * * * *     *** **   **   * *     **   * *   *  

consensus_259#0      TTAGAGTGCGCCTATGAGATTGTGGTATTTGGTGAAGAAACTGATGCAGTTGAGTGTGAC 359
consensus_259#1      CTAAACCCAGCTCACGTT-CCCTATTAGTGGGTGAACAATCC------------------ 224
                      ** *    **  * *      *  ** * ****** ** *                   

consensus_259#0      ATGAAGGCGTTGGTTCACAGTGAAAGGGTGTGTGTGTGTGAGTGAATCGTTGATGTGGAC 419
consensus_259#1      ------------------------------------------------------------
                                                                                 

consensus_259#0      AGCGATTGCGCGAAGTGGTTTGTCCGTTAGCAATTCGCGTGACTTTTTG 468
consensus_259#1      -------------------------------------------------