cluster # 2651

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 2651 cluster # 2651 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2651#0 length = 470 sequences # 1

consensus_2651#1 length = 446 sequences # 1

consensusID : consensus_2651#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 470
fasta sequence

                              [GTGAGGGCTTGACTTTCGACGACGTTGTGTGATTTCCTCAGAGTTTGTCCTATACACTTCTAGCGCTTCTTCTTGATTTCTTCCTCAACTGAAATCTGGTTTGTTGTCTCGCACAGTAGAATGTTGCTGATAGTATCTGACCAACAAATCCGAAGTATCTTTCGTACACAACTGTTAATAAACACCTGCCTATACTTATTAATAAAAAATAAGGTATTTAATTGTTCTCTTCATTTCTACATTGATAAACATAAAATGGATCATTTAAAAGGATCAGCCAAAACTTTGTTTAAACTATGAGGAAAATATAACAGCCAAATAAATGATGCCTACGTAAAAATGAAGATTATGAATTAAGTATGGTTATTGTTTACATCTTACAAAATATATGCTTGAACGTGAATAACTAAAGACAAATAAAGAGATGTTAAATTATAGAACGAGTTCTATTACACTATATACCTTTTAAT]

[+] EMBL CD066571             [GTGAGGGCTTGACTTTCGACGACGTTGTGTGATTTCCTCAGAGTTTGTCCTATACACTTCTAGCGCTTCTTCTTGATTTCTTCCTCAACTGAAATCTGGTTTGTTGTCTCGCACAGTAGAATGTTGCTGATAGTATCTGACCAACAAATCCGAAGTATCTTTCGTACACAACTGTTAATAAACACCTGCCTATACTTATTAATAAAAAATAAGGTATTTAATTGTTCTCTTCATTTCTACATTGATAAACATAAAATGGATCATTTAAAAGGATCAGCCAAAACTTTGTTTAAACTATGAGGAAAATATAACAGCCAAATAAATGATGCCTACGTAAAAATGAAGATTATGAATTAAGTATGGTTATTGTTTACATCTTACAAAATATATGCTTGAACGTGAATAACTAAAGACAAATAAAGAGATGTTAAATTATAGAACGAGTTCTATTACACTATATACCTTTTAAT]




>consensus_2651#0
GTGAGGGCTTGACTTTCGACGACGTTGTGTGATTTCCTCAGAGTTTGTCCTATACACTTC
TAGCGCTTCTTCTTGATTTCTTCCTCAACTGAAATCTGGTTTGTTGTCTCGCACAGTAGA
ATGTTGCTGATAGTATCTGACCAACAAATCCGAAGTATCTTTCGTACACAACTGTTAATA
AACACCTGCCTATACTTATTAATAAAAAATAAGGTATTTAATTGTTCTCTTCATTTCTAC
ATTGATAAACATAAAATGGATCATTTAAAAGGATCAGCCAAAACTTTGTTTAAACTATGA
GGAAAATATAACAGCCAAATAAATGATGCCTACGTAAAAATGAAGATTATGAATTAAGTA
TGGTTATTGTTTACATCTTACAAAATATATGCTTGAACGTGAATAACTAAAGACAAATAA
AGAGATGTTAAATTATAGAACGAGTTCTATTACACTATATACCTTTTAAT

consensusID : consensus_2651#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 446
fasta sequence

                              [TCTTTCATCTTCCGCTTTTCCTCTGGCATTCAGGACTCCATGTGAGGGCTTGACTTTCGACGACGTTGTGTGATTTCCTCAGTGTTTGTCCTATCCACTTCTAGCGCTTCTTCTTGATTTCTTCCTCAACTGAAATCTGGTTTGTTGTCTCGCACAGTAGAATGTTGCTGACAGTATCTGACCAACAAATCCGAAGTATCTTTCGTAGACAACTGTTAATAAACACCTGCATATTTGGACACTGGATCATATGAGAGAAGACTTGTTATTTCCCTGGAGATCGTAGCTATGTCCTACTGACGAATGCCAACTGATGTTAACATATATTTGTTTTTGCAGTTTAATTCATCATAAGCAAAGATAGATGATGGTTAGCAGTAGAATCCAGGACGCACGTTTCGTACTATACGGTACTCATCAGCTGGATGTACACGCATCCCAGTGTT]

[-] EMBL CD189446             [TCTTTCATCTTCCGCTTTTCCTCTGGCATTCAGGACTCCATGTGAGGGCTTGACTTTCGACGACGTTGTGTGATTTCCTCAGTGTTTGTCCTATCCACTTCTAGCGCTTCTTCTTGATTTCTTCCTCAACTGAAATCTGGTTTGTTGTCTCGCACAGTAGAATGTTGCTGACAGTATCTGACCAACAAATCCGAAGTATCTTTCGTAGACAACTGTTAATAAACACCTGCATATTTGGACACTGGATCATATGAGAGAAGACTTGTTATTTCCCTGGAGATCGTAGCTATGTCCTACTGACGAATGCCAACTGATGTTAACATATATTTGTTTTTGCAGTTTAATTCATCATAAGCAAAGATAGATGATGGTTAGCAGTAGAATCCAGGACGCACGTTTCGTACTATACGGTACTCATCAGCTGGATGTACACGCATCCCAGTGTT]




>consensus_2651#1
TCTTTCATCTTCCGCTTTTCCTCTGGCATTCAGGACTCCATGTGAGGGCTTGACTTTCGA
CGACGTTGTGTGATTTCCTCAGTGTTTGTCCTATCCACTTCTAGCGCTTCTTCTTGATTT
CTTCCTCAACTGAAATCTGGTTTGTTGTCTCGCACAGTAGAATGTTGCTGACAGTATCTG
ACCAACAAATCCGAAGTATCTTTCGTAGACAACTGTTAATAAACACCTGCATATTTGGAC
ACTGGATCATATGAGAGAAGACTTGTTATTTCCCTGGAGATCGTAGCTATGTCCTACTGA
CGAATGCCAACTGATGTTAACATATATTTGTTTTTGCAGTTTAATTCATCATAAGCAAAG
ATAGATGATGGTTAGCAGTAGAATCCAGGACGCACGTTTCGTACTATACGGTACTCATCA
GCTGGATGTACACGCATCCCAGTGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2651#0      -----------------------------------------GTGAGGGCTTGACTTTCGA 19
consensus_2651#1      TCTTTCATCTTCCGCTTTTCCTCTGGCATTCAGGACTCCATGTGAGGGCTTGACTTTCGA 60
                                                               *******************

consensus_2651#0      CGACGTTGTGTGATTTCCTCAGAGTTTGTCCTATACACTTCTAGCGCTTCTTCTTGATTT 79
consensus_2651#1      CGACGTTGTGTGATTTCCTCAGTGTTTGTCCTATCCACTTCTAGCGCTTCTTCTTGATTT 120
                      ********************** *********** *************************

consensus_2651#0      CTTCCTCAACTGAAATCTGGTTTGTTGTCTCGCACAGTAGAATGTTGCTGATAGTATCTG 139
consensus_2651#1      CTTCCTCAACTGAAATCTGGTTTGTTGTCTCGCACAGTAGAATGTTGCTGACAGTATCTG 180
                      *************************************************** ********

consensus_2651#0      ACCAACAAATCCGAAGTATCTTTCGTACACAACTGTTAATAAACACCTGCCTATACTTAT 199
consensus_2651#1      ACCAACAAATCCGAAGTATCTTTCGTAGACAACTGTTAATAAACACCTGCATAT-TTGGA 239
                      *************************** ********************** ***  *   

consensus_2651#0      TAATAAAAAATAAGGTATTTAA-TTGTTCTCTTCATTTCTACATTGATAAACATAAAATG 258
consensus_2651#1      CACTGGATCATATGAGAGAAGACTTGTTATTTCCCTGGAGATCGTAGCTATGTCCTACTG 299
                       * *  *  *** *  *    * ***** * * * *    *   *    *      * **

consensus_2651#0      GATCATTTAAAAGGAT-CAGCCAAAACTTTGTTTAAACTATGAGGAAAATATAACAGCCA 317
consensus_2651#1      ACGAATGCCAACTGATGTTAACATATATTTGTTTTTGCAGTTTAATTCATCATAAGCAAA 359
                          **   **  ***     ** *  *******   *  *       **   *     *

consensus_2651#0      AATAAATGATGCCTA-CGTAAAAATGAAGATTATGAATTAAGTATGGTTATTGTTTACAT 376
consensus_2651#1      GATAGATGATGGTTAGCAGTAGAATCCAGGACGCACGTTTCGTACTAT-ACGGTACTCAT 418
                       *** ******  ** *   * ***  **        **  ***   * *  **   ***

consensus_2651#0      CTTACAAAATATATGCTTGAACGTGAATAACTAAAGACAAATAAAGAGATGTTAAATTAT 436
consensus_2651#1      CA-GCTGGATGTACACGCATCCCAGTGTT------------------------------- 446
                      *   *   ** **  *     *  *  *                                

consensus_2651#0      AGAACGAGTTCTATTACACTATATACCTTTTAAT 470
consensus_2651#1      ----------------------------------